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BaseInfo

ncRNA ID	osa-miR2930
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:8376783-8376962 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	81 - UUCUCUUCUCUCGCGCGUGGCC - 102
Stem-loop(if miRNA)	-------------------      U      ----A     CUUCCUCCGGCGGCUGGGCUGAGCUGCGUCGCGCUUGGAUUUUUGCCUCCGAAUUGGCG                    CGCGCC CGCCUG     UGCUC                                                           A                    |||||| ||||||     |||||                    GUGCGG GUGGGC     CGGCG                                                           A GGGAGGGGAAAAUUUAAGA      -      GUUAG     UUUGAUGUUUCGCUCGGUUUGAAACGGGGUGUGGGUUCCGGUGCGCGCUCUCUUCUCUU
Stem-loop sequence	CGCGCCUCGCCUGAUGCUCCUUCCUCCGGCGGCUGGGCUGAGCUGCGUCGCGCUUGGAUUUUUGCCUCCGAAUUGGCGAAUUCUCUUCUCUCGCGCGUGGCCUUGGGUGUGGGGCAAAGUUUGGCUCGCUUUGUAGUUUGCGGCGAUUGCGGGUGGGCGUGAGAAUUUAAAAGGGGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243582.1	ncRNA:22   CCGGUGCGCGCUCUCUUCUCUU   1   |||||||||||||||||||||| targets:41   GGCCACGCGCGAGAGAAGAGAA   62 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100082N18, full insert sequence	NA	coding protein	psRNATarget
XM_015788455.1	ncRNA:22   CCGGUGCGCGCUCUCUUCUCUU   1   |||||||||||||||||||||| targets:122   GGCCACGCGCGAGAGAAGAGAA   143 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At1g66480 (LOC4340689), mRNA	uncharacterized protein At1g66480(LOC4340689)	coding protein	psRNATarget
CT833571.1	ncRNA:22   CCGGUGCGCGCUCUCUUCUCUU   1   |**|=||||||||||||||||= targets:622   GAGCGCGCGCGAGAGAAGAGAG   643 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215F09, full insert sequence	NA	coding protein	psRNATarget
XM_015771444.1	ncRNA:22   CCGGUGCGCGCUCUCUUCUCUU   1   *|**=||||||||||||||||| targets:27   AGAAGCGCGCGAGAGAAGAGAA   48 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330497 (LOC4330497), mRNA	uncharacterized LOC4330497(LOC4330497)	coding protein	psRNATarget
AK105197.1	ncRNA:22   CCGGUGCGCGCUCUCUUCUCUU   1   *|**=||||||||||||||||| targets:10   AGAAGCGCGCGAGAGAAGAGAA   31 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-107-G03, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20131478 "Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses"; Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK; Mol Genet Genomics. 282:463-474(2009).