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BaseInfo

ncRNA ID	novel_zma_miR1996
Species	Zea mays
Class	miRNA
Genome position	Chr10:57029173-57029244 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	49 - AGGACUAUAUAUAUAUAUAUAUAU - 72
Stem-loop(if miRNA)	AGGAC                               A      UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U      |||||||||||||||||||||||||||||||      GUGUGUGUGUGUGUGUAUAUAUAUAUAUAUA A ----A                               U
Stem-loop sequence	AGGACUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001151240.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGGA   1   |||||||||||||||||||*|||| targets:48   AUAUAUAUAUAUAUAUAUACUCCU   71 Target Full Sequence	1.5	Zea mays WW domain containing protein expressed (LOC100277752), mRNA	NA	coding protein	psRNATarget
EU970429.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGGA   1   |||||||||||||||||||*|||| targets:48   AUAUAUAUAUAUAUAUAUACUCCU   71 Target Full Sequence	1.5	Zea mays clone 345376 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT070081.2	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGGA   1   |||||||||||||||||||*|||* targets:411   AUAUAUAUAUAUAUAUAUACUCCC   434 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002G03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176960.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGGA   1   |||||||||||||||||||*|||* targets:411   AUAUAUAUAUAUAUAUAUACUCCC   434 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384423 (LOC100384423), mRNA	NA	coding protein	psRNATarget
XM_020543280.1	ncRNA:24   UAU--AUAUAUAUAUAUAUAUCAGGA   1   |||--||||||||||||||||||*|* targets:1056   AUAACUAUAUAUAUAUAUAUAGUACG   1081 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor-like protein DPB (LOC103636175), transcript variant X1, mRNA	NA	coding protein	psRNATarget