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BaseInfo

ncRNA ID	novel_zma_miR1994
Species	Zea mays
Class	miRNA
Genome position	Chr1:262666129-262666192 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	21
Mature sequence(if miRNA)	1 - UUUCUUUUUAGUUAUCGUUGG - 21
Stem-loop(if miRNA)	--    U        A            U  A   UUUC UUUUAGUU UCGUUGGAUAGU CA U   |||| |||||||| |||||||||||| ||   AAAG AAAAUCAA AGCGACUUAUUA GU U GC    C        C            C  U
Stem-loop sequence	UUUCUUUUUAGUUAUCGUUGGAUAGUUCAAUUUUGCAUUAUUCAGCGACAACUAAAACGAAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170144.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=||||||||||||||||| targets:48   UCAGCGAUAACUAAAAAGAAA   68 Target Full Sequence	1.0	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
HI409683.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=||||||||||||||||| targets:48   UCAGCGAUAACUAAAAAGAAA   68 Target Full Sequence	1.0	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=||||||||||||||||| targets:48   UCAGCGAUAACUAAAAAGAAA   68 Target Full Sequence	1.0	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
EU964554.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||||||||=||||||| targets:1379   UCAGCGAUAACUAGAAAGAAA   1399 Target Full Sequence	2.5	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU945792.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||||||||=||||||| targets:1230   UCAGCGAUAACUAGAAAGAAA   1250 Target Full Sequence	2.5	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||||||| targets:50   CCAACGACAACUAAAAAGAAA   70 Target Full Sequence	1.0	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
HI406357.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||||||| targets:50   CCAACGACAACUAAAAAGAAA   70 Target Full Sequence	1.0	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
JB166818.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||||||| targets:50   CCAACGACAACUAAAAAGAAA   70 Target Full Sequence	1.0	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:2580   CCAGCGACAACUAAAAAGAAA   2600 Target Full Sequence	2.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:1203   CCAGCGACAACUAAAAAGAAA   1223 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:1567   CCAGCGACAACUAAAAAGAAA   1587 Target Full Sequence	2.0	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:1567   CCAGCGACAACUAAAAAGAAA   1587 Target Full Sequence	2.0	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:1214   CCAGCGACAACUAAAAAGAAA   1234 Target Full Sequence	2.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062468.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:623   CCAGCGACAACUAAAAAGAAA   643 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:359   CCAGCGACAACUAAAAAGAAA   379 Target Full Sequence	2.0	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
JB167785.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:58   CCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
HI407324.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:58   CCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:58   CCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
JB169695.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:55   CCAGCGACAACUAAAAAGAAA   75 Target Full Sequence	2.0	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
HI409234.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:55   CCAGCGACAACUAAAAAGAAA   75 Target Full Sequence	2.0	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:55   CCAGCGACAACUAAAAAGAAA   75 Target Full Sequence	2.0	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
JB170012.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:48   CCAGCGACAACUAAAAAGAAA   68 Target Full Sequence	2.0	Sequence 7676 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241681.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:48   CCAGCGACAACUAAAAAGAAA   68 Target Full Sequence	2.0	Sequence 7676 from Patent EP2985353	NA	coding protein	psRNATarget
HI409551.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:48   CCAGCGACAACUAAAAAGAAA   68 Target Full Sequence	2.0	Sequence 7676 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235202.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:45   CCAGCGACAACUAAAAAGAAA   65 Target Full Sequence	2.0	Sequence 1197 from Patent EP2985353	NA	coding protein	psRNATarget
JB163533.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:45   CCAGCGACAACUAAAAAGAAA   65 Target Full Sequence	2.0	Sequence 1197 from Patent EP2559767	NA	coding protein	psRNATarget
HI403072.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|||*||||||||||||| targets:45   CCAGCGACAACUAAAAAGAAA   65 Target Full Sequence	2.0	Sequence 1197 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||*||||||||||||| targets:1384   UCAGCGACAACUAAAAAGAAA   1404 Target Full Sequence	2.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||*||||||||||||| targets:39   UCAGCGACAACUAAAAAGAAA   59 Target Full Sequence	2.0	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
DQ245168.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =|||*||||||||||||||=| targets:549   UCAAGGAUAACUAAAAAGAGA   569 Target Full Sequence	2.5	Zea mays clone 13463 mRNA sequence	NA	coding protein	psRNATarget
DQ245249.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =|||*||||||||||||||=| targets:549   UCAAGGAUAACUAAAAAGAGA   569 Target Full Sequence	2.5	Zea mays clone 14034 mRNA sequence	NA	coding protein	psRNATarget
HI407230.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||*||||||||||||| targets:58   UCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||*||||||||||||| targets:58   UCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
JB167691.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   =||=|||*||||||||||||| targets:58   UCAGCGACAACUAAAAAGAAA   78 Target Full Sequence	2.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020544250.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||*|||||||||| targets:2487   CCAACGACAAAUAAAAAGAAA   2507 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU947933.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   ||||*||*||||||||||||| targets:142   CCAAAGAAAACUAAAAAGAAA   162 Target Full Sequence	2.0	Zea mays clone 366777 mRNA sequence	NA	coding protein	psRNATarget
HI403369.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||*|||||||||| targets:63   CCAACGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1494 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235499.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||*|||||||||| targets:63   CCAACGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1494 from Patent EP2985353	NA	coding protein	psRNATarget
JB163830.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||*|||||||||| targets:63   CCAACGACAAAUAAAAAGAAA   83 Target Full Sequence	2.5	Sequence 1494 from Patent EP2559767	NA	coding protein	psRNATarget
HI406784.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||*|||| targets:46   CCAACGACAACUAAAACGAAA   66 Target Full Sequence	2.5	Sequence 4909 from Patent EP2074227	NA	coding protein	psRNATarget
JB167245.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||*|||| targets:46   CCAACGACAACUAAAACGAAA   66 Target Full Sequence	2.5	Sequence 4909 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238914.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||||||*||||||||*|||| targets:46   CCAACGACAACUAAAACGAAA   66 Target Full Sequence	2.5	Sequence 4909 from Patent EP2985353	NA	coding protein	psRNATarget
EU971439.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|*|*||||||||||||| targets:2165   CCAGCUACAACUAAAAAGAAA   2185 Target Full Sequence	3.0	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=|*|*||||||||||||| targets:2165   CCAGCUACAACUAAAAAGAAA   2185 Target Full Sequence	3.0	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |*|=|||*||||||||||||| targets:887   CGAGCGACAACUAAAAAGAAA   907 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
BT055583.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |*|=|||*||||||||||||| targets:887   CGAGCGACAACUAAAAAGAAA   907 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
HI406120.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=||**||||||||||||| targets:48   CCAGCGCCAACUAAAAAGAAA   68 Target Full Sequence	3.0	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
JB166581.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=||**||||||||||||| targets:48   CCAGCGCCAACUAAAAAGAAA   68 Target Full Sequence	3.0	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   |||=||**||||||||||||| targets:48   CCAGCGCCAACUAAAAAGAAA   68 Target Full Sequence	3.0	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001352563.1	ncRNA:21   GGUUGCUAUUGAUUUUUCUUU   1   **|||||*||=|||||||||| targets:11   AAAACGAAAAUUAAAAAGAAA   31 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272642 (LOC100272642), mRNA	NA	coding protein	psRNATarget