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BaseInfo

ncRNA ID	novel_zma_miR1992
Species	Zea mays
Class	miRNA
Genome position	Chr1:252233343-252233488 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR4237221;SRR5100255
Length	24
Mature sequence(if miRNA)	123 - AUCGGACUGUCCGGUGCACCCGAC - 146
Stem-loop(if miRNA)	--A  AG         U        UG        --          G  AGAUCU   A  GUCGGCAACGGUCG    GG  GCACCGGAC GUCCGGUG  CACCGGAC  UGUCCGGUGC CC      GCA CG              G    ||  ||||||||| ||||||||  ||||||||  |||||||||| ||      ||| ||    CC  CGUGGCCUG CAGGCUAC  GUGGCCUG  ACAGGCCACG GG      AUA AA              C CAG  CA         U        GU        UG          -  --CUAA   -  GGAAUUUGUCGCGU
Stem-loop sequence	AGGAGGCACCGGACUGUCCGGUGUGCACCGGACUGUCCGGUGCGCCAGAUCUGCAACGGUCGGCAACGGUCGGCUGCGCUGUUUAAGGAAAUAAAUCGGGCACCGGACAGUGUCCGGUGUGCAUCGGACUGUCCGGUGCACCCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065201.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||||||||||||||||||||||=| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||||||||||||||||||||||=| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||||||||||||||||||=| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||||||||||||||||||=| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||||||||||||||||||=| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||||||*|||||||||||||||=| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||||||*|||||||||||||||=| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |*=|||||||||||||||||||=| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGC-------CCACGUGGCCUGUCAGGCUA   1   ||=|-------||||||||||||||||||=| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |*=|||||||||||||||||||=| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGC-------CCACGUGGCCUGUCAGGCUA   1   ||=|-------||||||||||||||||||=| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |*|*||||||||||||||||||=| targets:828   GCCUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CAGC--------CCACGUGGCCUGUCAGGCUA   1   ||||--------||||||||||||||||||=| targets:753   GUCGAGUGCCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   *|||||*|||||||||||||||=| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   *|||||*|||||||||||||||=| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   *|||||*|||||||||||||||=| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |||*||*|||||||||||||||=| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:86   GUCGCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	2.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   **||||*|||||||||||||||=| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   **||||*|||||||||||||||=| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:141   GUCGAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	2.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:470   GUCGCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |*|*||*|||||||||||||||=| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   |*|*||*|||||||||||||||=| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGCUA   1   ||||---||*|||||||||||||||=| targets:2535   GUCGACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
JB167053.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ****||||||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	1.5	Sequence 4717 from Patent EP2559767	NA	coding protein	psRNATarget
HI406592.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ****||||||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	1.5	Sequence 4717 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238722.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ****||||||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	1.5	Sequence 4717 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||--|||||||||||||||||*|| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||--|||||||||||||||||*|| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGCUA   1   ||--|||||||||||||||||*|| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CAGC--CCACGUGGCCUGUCAGGCUA   1   *|=|--||*|||||||||||||||=| targets:171   UUUGAUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	2.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget