Search result

BaseInfo

ncRNA ID novel_zma_miR1990
Species Zea mays
Class miRNA
Genome position Chr1:21311367-21311428 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR2089701;SRR2089704;SRR2089705
Length 24
Mature sequence(if miRNA) 1 - UGUGUUGAGGUGGAUUGAUGUGUA - 24
Stem-loop(if miRNA) --                 AU      A   
  UGUGUUGAGGUGGAUUG  GUGUAA UUAG
  |||||||||||||||||  |||||| |||U
  ACAUAACUCUACCUAAC  CAUAUU AAUU
GU                 -C      G   
Stem-loop sequence UGUGUUGAGGUGGAUUGAUGUGUAAAUUAGUUUAAGUUAUACCCAAUCCAUCUCAAUACAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403455.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||||=||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

1.0 Sequence 1580 from Patent EP2074227 NA coding protein psRNATarget
JB163916.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||||=||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

1.0 Sequence 1580 from Patent EP2559767 NA coding protein psRNATarget
LQ235585.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||||=||||||||||||||||
targets:59   UACACAUUAAUCCACCUCAACACA   82

1.0 Sequence 1580 from Patent EP2985353 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  ||=||||||||||||=||||||||
targets:60   UAUACAUCAAUCCACUUCAACACA   83

1.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
JB163398.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  ||=||||||||||||=||||||||
targets:60   UAUACAUCAAUCCACUUCAACACA   83

1.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
HI402937.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  ||=||||||||||||=||||||||
targets:60   UAUACAUCAAUCCACUUCAACACA   83

1.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||*||||||||||||||=|||
targets:882   UACACCUCAAUCCACCUCAAUACA   905

2.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||*||||||||||||||=|||
targets:882   UACACCUCAAUCCACCUCAAUACA   905

2.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
AY110392.1
ncRNA:24   AUGUGU---AGUUAGGUGGAGUUGUGU   1
  ||=|||---||||||||||||||||||
targets:148   UAUACACCCUCAAUCCACCUCAACACA   174

3.0 Zea mays CL7038_2 mRNA sequence NA coding protein psRNATarget
EU941642.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |||||*||||||||||||||=|||
targets:9   UACACCUCAAUCCACCUCAAUACA   32

2.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
JB163659.1
ncRNA:24   AUGUGU--AGUUAGGUGGAGUUGUGU   1
  |==|||--||||||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAACACA   84

2.5 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   AUGUGU--AGUUAGGUGGAGUUGUGU   1
  |==|||--||||||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAACACA   84

2.5 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
HI403198.1
ncRNA:24   AUGUGU--AGUUAGGUGGAGUUGUGU   1
  |==|||--||||||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAACACA   84

2.5 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
HI403262.1
ncRNA:24   AUGUGUAG--UUAGGUGGAGUUGUGU   1
  |*=|||||--||||||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAACACA   84

2.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
EU963259.1
ncRNA:24   AUGU---GUAGUUAGGUGGAGUUGUGU   1
  *|||---|*||||||||=|||||||||
targets:1050   AACAAGCCCUCAAUCCAUCUCAACACA   1076

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT068211.1
ncRNA:24   AUGU---GUAGUUAGGUGGAGUUGUGU   1
  *|||---|*||||||||=|||||||||
targets:807   AACAAGCCCUCAAUCCAUCUCAACACA   833

2.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AUGU---GUAGUUAGGUGGAGUUGUGU   1
  *|||---|*||||||||=|||||||||
targets:807   AACAAGCCCUCAAUCCAUCUCAACACA   833

2.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EZ054831.1
ncRNA:24   AUGUGUAGUUAGGUGGAGUUGUGU   1
  |*=|||*|||||||||*|||||||
targets:86   UCUACAACAAUCCACCCCAACACA   109

2.5 TSA: Zea mays contig55953, mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.