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BaseInfo

ncRNA ID osa-miR5154
Species Oryza sativa
Class miRNA
Genome position Chr6:5263432-5263552 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 86 - AGCACCAGUUGACGUGACGCUGAG - 109
Stem-loop(if miRNA) ----              AC  -AA    AC  C      UAUAC   ---  CAUGCCGACUCAG
    UUAGACAUCUCAGC  CA   UAGC  GG GCUGGA     GUU   GG             C
    ||||||||||||||  ||   ||||  || ||||||     |||   ||
    AAUCUGUGGAGUCG  GU   GUUG  CC CGACUU     CGG   GG             C
GUUG              CA  GCA    -A  A      ----A   CAC  UGAUGUCUACCCU
Stem-loop sequence UUAGACAUCUCAGCACCAAAUAGCACGGCGCUGGAUAUACGUUGGCAUGCCGACUCAGCCUCCCAUCUGUAGUGGCACGGCAUUCAGCACCAGUUGACGUGACGCUGAGGUGUCUAAGUUG

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).