ncRNA ID | osa-miR5154 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:5263432-5263552 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 86 - AGCACCAGUUGACGUGACGCUGAG - 109 |
Stem-loop(if miRNA) |
----              AC  -AA    AC  C      UAUAC   ---  CAUGCCGACUCAG     UUAGACAUCUCAGC  CA   UAGC  GG GCUGGA     GUU   GG             C     ||||||||||||||  ||   ||||  || ||||||     |||   ||     AAUCUGUGGAGUCG  GU   GUUG  CC CGACUU     CGG   GG             C GUUG              CA  GCA    -A  A      ----A   CAC  UGAUGUCUACCCU |
Stem-loop sequence | UUAGACAUCUCAGCACCAAAUAGCACGGCGCUGGAUAUACGUUGGCAUGCCGACUCAGCCUCCCAUCUGUAGUGGCACGGCAUUCAGCACCAGUUGACGUGACGCUGAGGUGUCUAAGUUG |
1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |