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BaseInfo

ncRNA ID novel_zma_miR1977
Species Zea mays
Class miRNA
Genome position Chr9:6333886-6333985 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 20
Mature sequence(if miRNA) 81 - UUUGAUCCAGAUGCAACCGA - 100
Stem-loop(if miRNA) --    U      A                ----------    -  -  CAG   A
  GGUU GUGUCU GAUCGAAGGGGAUUAA          AUCC CU CU   UCA A
  |||| |||||| ||||||||||||||||          |||| || ||   |||
  CCAA CGUAGA CUAGUUUCCCCUAAUU          UAGG GA GA   AGU A
AG    -      C                CCCCCUAAUU    A  A  -UA   U
Stem-loop sequence GGUUUGUGUCUAGAUCGAAGGGGAUUAAAUCCCUCUCAGUCAAAAUUGAAUAGAAGAGGAUUUAAUCCCCCUUAAUCCCCUUUGAUCCAGAUGCAACCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001138999.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:620   UCGGUUGCUUCUGGAUCAAA   639

1.5 Zea mays uncharacterized LOC100193927 (LOC100193927), mRNA NA coding protein psRNATarget
BT036315.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:620   UCGGUUGCUUCUGGAUCAAA   639

1.5 Zea mays full-length cDNA clone ZM_BFb0106N02 mRNA, complete cds NA coding protein psRNATarget
EU948310.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:660   UCGGUUGCUUCUGGAUCAAA   679

1.5 Zea mays clone 372688 mRNA sequence NA coding protein psRNATarget
BT061759.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:1525   UCGGUUGCUUCUGGAUCAAA   1544

1.5 Zea mays full-length cDNA clone ZM_BFb0180I03 mRNA, complete cds NA coding protein psRNATarget
XM_020553085.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2640   UCGGUUGCUUCUGGAUCAAA   2659

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020553084.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2705   UCGGUUGCUUCUGGAUCAAA   2724

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020553083.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2719   UCGGUUGCUUCUGGAUCAAA   2738

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020553082.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2727   UCGGUUGCUUCUGGAUCAAA   2746

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008682997.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2730   UCGGUUGCUUCUGGAUCAAA   2749

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008682996.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2734   UCGGUUGCUUCUGGAUCAAA   2753

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008682995.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2749   UCGGUUGCUUCUGGAUCAAA   2768

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008682994.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2795   UCGGUUGCUUCUGGAUCAAA   2814

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008682993.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2799   UCGGUUGCUUCUGGAUCAAA   2818

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008682992.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2809   UCGGUUGCUUCUGGAUCAAA   2828

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682991.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2817   UCGGUUGCUUCUGGAUCAAA   2836

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682990.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||||||||*|||||||||||
targets:2821   UCGGUUGCUUCUGGAUCAAA   2840

1.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X1, mRNA NA coding protein psRNATarget
EZ099913.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  |=||*|||||||||||||||
targets:5   UUGGCUGCAUCUGGAUCAAA   24

2.0 TSA: Zea mays contig35568, mRNA sequence NA coding protein psRNATarget
XM_020552828.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  |=||||||||||*|||||||
targets:11   UUGGUUGCAUCUAGAUCAAA   30

2.5 PREDICTED: Zea mays protein DMR6-LIKE OXYGENASE 2 (LOC103655881), mRNA NA coding protein psRNATarget
BT068345.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||*|||||=|||||||||||
targets:591   UCCGUUGCGUCUGGAUCAAA   610

2.5 Zea mays full-length cDNA clone ZM_BFb0130D13 mRNA, complete cds NA coding protein psRNATarget
NM_001176441.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||*|||||=|||||||||||
targets:591   UCCGUUGCGUCUGGAUCAAA   610

2.5 Zea mays uncharacterized LOC100383809 (LOC100383809), mRNA NA coding protein psRNATarget
XM_008647317.2
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||*|||||=|||||||||||
targets:1535   UCCGUUGCGUCUGGAUCAAA   1554

2.5 PREDICTED: Zea mays uncharacterized LOC100383809 (LOC100383809), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020538788.1
ncRNA:20   AGCCAACGUAGACCUAGUUU   1
  ||*|||||=|||||||||||
targets:1667   UCCGUUGCGUCUGGAUCAAA   1686

2.5 PREDICTED: Zea mays uncharacterized LOC100383809 (LOC100383809), transcript variant X2, mRNA NA coding protein psRNATarget
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