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BaseInfo

ncRNA ID	novel_zma_miR1974
Species	Zea mays
Class	miRNA
Genome position	Chr9:52203188-52203326 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714;SRR2089704;SRR2089705;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GGUGGACAGGGAAUUGAAGGGGAU - 24
Stem-loop(if miRNA)	--        G       A           AG                       -UCCAU     -      GGUGGACA GGAAUUG AGGGGAUCCAU  GGAGUAAUCCCCUCCUUAUUCAA      GUGGA AGGA   |||||||| ||||||| |||||||||||  |||||||||||||||||||||||      ||||| |||A   CCACCUGU UCUUAAC UCUCCUAGGUA  UCUCAUUAGGGGAGGAAUAAGUU      UAUCU UCCU AA        A       C           CU                       CAAACU     C
Stem-loop sequence	GGUGGACAGGGAAUUGAAGGGGAUCCAUAGGGAGUAAUCCCCUCCUUAUUCAAUCCAUGUGGAAGGAAUCCUCUCUAUUCAAACUUGAAUAAGGAGGGGAUUACUCUUCAUGGAUCCUCUCCAAUUCUAUGUCCACCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552919.1	ncRNA:24   UAGGGGAAGUUAAGGGACAGGUGG   1   ||=||||**||||||||||||||| targets:1597   AUUCCCUCAAAUUCCCUGUCCACC   1620 Target Full Sequence	2.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552918.1	ncRNA:24   UAGGGGAAGUUAAGGGACAGGUGG   1   ||=||||**||||||||||||||| targets:2250   AUUCCCUCAAAUUCCCUGUCCACC   2273 Target Full Sequence	2.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552746.1	ncRNA:24   UAGGGGAAGUUAAGGGACAGGUGG   1   |||=||||||*|||*||||||||| targets:5603   AUCUCCUUCAUUUCACUGUCCACC   5626 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654224 (LOC103654224), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU946498.1	ncRNA:24   UAG--GGGAAGUUAAGGGACAGGUGG   1   =||--=||||||=|||*||||||||| targets:237   GUCAGUCCUUCAGUUCACUGUCCACC   262 Target Full Sequence	2.5	Zea mays clone 313934 mRNA sequence	NA	coding protein	psRNATarget