Search result

BaseInfo

ncRNA ID	novel_zma_miR1973
Species	Zea mays
Class	miRNA
Genome position	Chr9:7710315-7710457 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	21
Mature sequence(if miRNA)	1 - CCGGACUGUCUGGUGUGUCAG - 21
Stem-loop(if miRNA)	--AAUU        U   A    CC          G       C CUCUAG  GA      --C      -  C       CACCGGAC GUC GGUG  ACACCGGACA UGUCCGG G      AG  GAGCGA   UCUGAA CU G       |||||||| ||| ||||  |||||||||| ||||||| |      ||  ||||||   |||||| ||       GUGGUCUG CAG CCAC  UGUGGCCUGU ACAGGCC C      UC  CUCGCU   GGGCUU GA C GACUGU        U   G    -A          -       A UUAAUA  GC      UAA      C  C
Stem-loop sequence	AAUUCACCGGACUGUCAGGUGCCACACCGGACAGUGUCCGGCGCUCUAGAGGAGAGCGACUCUGAACUCGCCAGCUUCGGGAAUUCGCUCCGCUAUAAUUCACCGGACAUGUCCGGUGUACACCGGACUGUCUGGUGUGUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241540.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   |||=||||||=|||||||||| targets:12   CUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   |||=||||||=|||||||||| targets:12   CUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   |||=||||||=|||||||||| targets:12   CUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT083610.2	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   |||=||||||=|||||||||| targets:697   CUGGCACACCGGACAGUCCGG   717 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=||||||=|||||||||| targets:799   GUGGCACACCGGACAGUCCGG   819 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   =||=||||||=|||||||||| targets:724   UUGGCACACCGGACAGUCCGG   744 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=|=||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.0	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
HI410005.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=|=||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.0	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=|=||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.0	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=||||||=|||||||||| targets:96   GUGGCACACCGGACAGUCCGG   116 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT066461.2	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=|=||||||||||||||| targets:485   GUGGCGCACCAGACAGUCCGG   505 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||=||||||=|||||||||| targets:1381   GUGGCACACCGGACAGUCCGG   1401 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:21   GAC-UGUGUGGUCUGUCAGGCC   1   *||-||=||||||||||||||| targets:37   GUGCACGCACCAGACAGUCCGG   58 Target Full Sequence	3.0	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
U41079.1	ncRNA:21   GACUGUGUGGUCUGUCAGGCC   1   *||||*||||=|||||||||| targets:26   GUGACUCACCGGACAGUCCGG   46 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget