Search result

BaseInfo

ncRNA ID	novel_zma_miR1969
Species	Zea mays
Class	miRNA
Genome position	Chr9:45942911-45942963 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714
Length	24
Mature sequence(if miRNA)	1 - AAGGGGAUUUGAGGUUACCAAAGU - 24
Stem-loop(if miRNA)	--     -  A               G   UUUGG AA CUCAAAUUCUCUUCG G   ||||| || |||||||||||||||   AAACC UU GAGUUUAGGGGAAGU A UG     A  G               U
Stem-loop sequence	UUUGGAAACUCAAAUUCUCUUCGGGAUUGAAGGGGAUUUGAGGUUACCAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008679616.2	ncRNA:24   UGAAACCAUUGGAGUUUAGGGGAA   1   |||||||*|||||||||||||||| targets:1129   ACUUUGGGAACCUCAAAUCCCCUU   1152 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103652675 (LOC103652675), mRNA	NA	coding protein	psRNATarget
EU971414.1	ncRNA:24   UGAAACCAUUGGAGUUUAGGGGAA   1   ||||||**|||||||||||||||| targets:987   ACUUUGAAAACCUCAAAUCCCCUU   1010 Target Full Sequence	2.0	Zea mays clone 364104 transcription initiation factor TFIID subunit 11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158145.1	ncRNA:24   UGAAACCAUUGGAGUUUAGGGGAA   1   ||||||**|||||||||||||||| targets:987   ACUUUGAAAACCUCAAAUCCCCUU   1010 Target Full Sequence	2.0	Zea mays transcription initiation factor TFIID subunit 11 (LOC100285251), mRNA	NA	coding protein	psRNATarget
BT037634.1	ncRNA:24   UGAAACCAUUGGAGUUUAGGGGAA   1   ||||||**|||||||||||||||| targets:217   ACUUUGAAAACCUCAAAUCCCCUU   240 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0184G18 mRNA, complete cds	NA	coding protein	psRNATarget