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BaseInfo

ncRNA ID novel_zma_miR1962
Species Zea mays
Class miRNA
Genome position Chr9:95289034-95289166 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - ACGGUCUGCGACCUGGUGCAGGAG - 24
Stem-loop(if miRNA)     --GG     -       G     U G    G G -     G       A C    GU   -   G
CUCU    UCAGG CGCGGAC GUCCG G CCUG G C CGGAC GUCCGCG C UGGC  GAG GCG C
||||    ||||| ||||||| ||||| | |||| | | ||||| ||||||| | ||||  ||| |||
GAGG    GGUCC GCGUCUG CAGGC C GGGC C G GCCUG CAGGCGC G ACUG  CUC CGU U
    ACGU     A       G     - G    A G C     G       - A    GU   U   G
Stem-loop sequence CUCUGGUCAGGCGCGGACGGUCCGUGGCCUGGGGCCGGACGGUCCGCGACCUGGCGUGAGGCGGCUGUGCUCUCUGGUCAAGCGCGGACGGUCCGCGGCACGGGGCCGGACGGUCUGCGACCUGGUGCAGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950447.1
ncRNA:24   GAGG------ACGUGGUCCAGCGUCUGGCA   1
  *|||------||||||*||||||||=||||
targets:647   GUCCGGCGAGUGCACCUGGUCGCAGGCCGU   676

2.5 Zea mays clone 491631 mRNA sequence NA coding protein psRNATarget