Search result

BaseInfo

ncRNA ID	novel_zma_miR1961
Species	Zea mays
Class	miRNA
Genome position	Chr9:102185351-102185479 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714;SRR1997866
Length	24
Mature sequence(if miRNA)	106 - CUGCGUACGCGCGGACCGUCUGGC - 129
Stem-loop(if miRNA)	--       C C      C     GCC   A    G     C    --    GUCA  CAGAGAAG   CUGCGUA G GCGGAC GUCUG   CCU GGGC CGGAC GUCC  GGCC    GG        C   ||||||| | |||||| |||||   ||| |||| ||||| ||||  ||||    ||   GACGCGU C CGCCUG CAGGC   GGA CCCG GCCUG CAGG  CCGG    CG        C GA       C C      A     GCC   C    -     C    CG    ACCA  CGCCGAUC
Stem-loop sequence	CUGCGUACGCGCGGACCGUCUGGCCCCUAGGGCGCGGACCGUCCGGCCGUCAGGCAGAGAAGCCCUAGCCGCGCACCAGGCCGCGGACCGUCCGGCCCCAGGCCGCGGACAGUCCGCCCCUGCGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=|||||||||||||||||||| targets:1001   GCCGGACGGUCCGCGCGUACGCAG   1024 Target Full Sequence	0.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:344   GCCGGACGGUCCGCGCGUGCGCAG   367 Target Full Sequence	1.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:285   GCCGGACGGUCCGCGCGUGCGCAG   308 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:866   GCCGGACGGUCCGCGCGUGCGCAG   889 Target Full Sequence	1.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:793   GCCGGACGGUCCGCGCGUGCGCAG   816 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1127   GCCGGACGGUCCGCGCGUGCGCAG   1150 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174685.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA	NA	coding protein	psRNATarget
BT062567.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480 Target Full Sequence	1.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1442   GCCGGACGGUCCGCGCGUGCGCAG   1465 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:1524   GCCGGACGGUCCGCGCGUGCGCAG   1547 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |||=||||||||||||||=||||| targets:2227   GCCGGACGGUCCGCGCGUGCGCAG   2250 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |=|=||||||||||||||=||||| targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CGGUCUGCCAGGCGCGCAUGCGUC   1   |=|=||||||||||||||=||||| targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CG-GUCUGCCAGGCGCGCAUGCGUC   1   ||-|=||||||||||||||=||||| targets:780   GCGCGGACGGUCCGCGCGUGCGCAG   804 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CG-GUCUGCCAGGCGCGCAUGCGUC   1   ||-|=||||||||||||||=||||| targets:780   GCGCGGACGGUCCGCGCGUGCGCAG   804 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549172.1	ncRNA:24   CG-GUCUGCCAGGCGCGCAUGCGUC   1   ||-=|||*|||||||||||*||||| targets:41   GCAUAGAAGGUCCGCGCGUCCGCAG   65 Target Full Sequence	2.5	PREDICTED: Zea mays WD repeat-containing protein slp1-like (LOC103647931), mRNA	NA	coding protein	psRNATarget
XM_020549172.1	ncRNA:24   CG-GUCUGCCAGGCGCGCAUGCGUC   1   ||-==||*|||||||||||*||||| targets:137   GCAUGGAAGGUCCGCGCGUCCGCAG   161 Target Full Sequence	2.5	PREDICTED: Zea mays WD repeat-containing protein slp1-like (LOC103647931), mRNA	NA	coding protein	psRNATarget
EU955700.1	ncRNA:24   CG-GUCUGCCAGGCGCGCAUGCGUC   1   ||-==||*|||||||||||*||||| targets:101   GCAUGGAAGGUCCGCGCGUCCGCAG   125 Target Full Sequence	2.5	Zea mays clone 1542763 mRNA sequence	NA	coding protein	psRNATarget
XM_020537935.1	ncRNA:23   GGUCUGCCAGGCGCGCAUGCGUC   1   *==||*|||||||||||*||||| targets:1   AUGGAAGGUCCGCGCGUCCGCAG   23 Target Full Sequence	2.5	PREDICTED: Zea mays fe(2+) transport protein 1-like (LOC109939635), mRNA	NA	coding protein	psRNATarget