Search result

BaseInfo

ncRNA ID osa-miR1320-5p
Species Oryza sativa
Class miRNA
Genome position Chr6:5073507-5073602 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 64 - UGGAACGGAGGAAUUUUAUAG - 84
Stem-loop(if miRNA) ---U    C    U          G             UU    CGGGA
    UAGG CUAC UUGGAACGGA GAAUUUUAUAGGA  UUUG     A
    |||| |||| |||||||||| |||||||||||||  ||||
    AUCC GAUG AACCUUGCUU CUUAAAAUGUCCU  AGAC     U
GAUU    C    U          A             -U    AAUUU
Stem-loop sequence UUAGGCCUACUUUGGAACGGAGGAAUUUUAUAGGAUUUUUGCGGGAAUUUUAACAGAUUCCUGUAAAAUUCAUUCGUUCCAAUGUAGCCCUAUUAG

Reference

1 PMID:18323537
"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa";
Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ;
Genome Res. 18:571-584(2008).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).