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BaseInfo

ncRNA ID	novel_zma_miR1959
Species	Zea mays
Class	miRNA
Genome position	Chr9:142618326-142618390 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715
Length	24
Mature sequence(if miRNA)	42 - GAGGGAUUGAAGAGGAUUGAUGGG - 65
Stem-loop(if miRNA)	--     A   A  A          GA    GA   GAGGG UUG AG GGAUUGAUGG  AAAU  A   ||||| ||| || ||||||||||  ||||   CUCCC AAC UC CCUAACUACU  UUUA  C UA     -   C  C          UC    AU
Stem-loop sequence	GAGGGAUUGAAGAGGAUUGAUGGGAAAAUGAACUAAUUUCUUCAUCAAUCCCCUCCAACCCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942844.1	ncRNA:24   GGGU--AGUUAGGAGAAGUUAGGGAG   1   =|||--||||||||||||||||||** targets:195   UCCACCUCAAUCCUCUUCAAUCCCGA   220 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   GGGUAGUUAGGAGAAGUUAGGGAG   1   *||-|||||||*|||||||||||| targets:5053   ACC-UCAAUCCACUUCAAUCCCUC   5075 Target Full Sequence	1.5	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   GGGU--AGUUAGGAGAAGUUAGGGAG   1   =*||--|||||||*|||||||||||| targets:732   UACACUUCAAUCCACUUCAAUCCCUC   757 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   GGGU--AGUUAGGAGAAGUUAGGGAG   1   =*||--|||||||*|||||||||||| targets:1080   UACACUUCAAUCCACUUCAAUCCCUC   1105 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   GGGUAGUUAGGAGAAGUUAGGGAG   1   =***|=|||||*|||||||||||| targets:183   UGAUUUAAUCCCCUUCAAUCCCUC   206 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget