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BaseInfo

ncRNA ID novel_zma_miR1956
Species Zea mays
Class miRNA
Genome position Chr5:117620153-117620256 [-]
Reference genome RefGen_v4
Source SRR1583941;SRR1583944;SRR2647221;SRR2647390;SRR1583942
Length 21
Mature sequence(if miRNA) 84 - UACUCUAUUAUUUAUCUUAAU - 104
Stem-loop(if miRNA) --       U             CUA   A          GAUUG    GUAAA
  UACUCUA UAUUUAUCUUAAU   UAU UAUUGAGGUG     GGGU     U
  ||||||| |||||||||||||   ||| ||||||||||     ||||
  AUGAGAU AUAAGUAGGGUUA   GUA AUAACUCCAC     UUCA     U
CU       C             UGG   C          ----A    AUUGU
Stem-loop sequence UACUCUAUUAUUUAUCUUAAUCUAUAUAUAUUGAGGUGGAUUGGGGUGUAAAUUUGUUAACUUACACCUCAAUACAUGGGUAUUGGGAUGAAUACUAGAGUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069846.2
ncRNA:21   UAAUUCUAUUUAUUAUCUCAU   1
  |*|=|||||||||*|||||||
targets:106   AAUGAGAUAAAUACUAGAGUA   126

2.5 Zea mays full-length cDNA clone ZM_BFb0304I20 mRNA, complete cds NA coding protein psRNATarget
BT084613.2
ncRNA:21   UAAUUCUAUUUAUUAUCUCAU   1
  |*|=|||||||||*|||||||
targets:105   AAUGAGAUAAAUACUAGAGUA   125

2.5 Zea mays full-length cDNA clone ZM_BFb0145P16 mRNA, complete cds NA coding protein psRNATarget