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BaseInfo

ncRNA ID	novel_zma_miR1954
Species	Zea mays
Class	miRNA
Genome position	Chr9:152675362-152675459 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089699
Length	23
Mature sequence(if miRNA)	76 - AAUCUAUGUGGAUUGAGUGGGAU - 98
Stem-loop(if miRNA)	--   C           AG        -----------AAUA   UUUAAUCCC   AAU UAUGUGGAUUG  UGGGAUUG               GAU         A   ||| |||||||||||  ||||||||               |||         A   UUA GUGUACCUAAC  ACCCUAAC               UUC         A GG   U           CU        CUUUUUUAACUCUUC   AAACUGAAC
Stem-loop sequence	AAUCUAUGUGGAUUGAGUGGGAUUGAAUAGAUUUUAAUCCCAAACAAGUCAAACUUCUUCUCAAUUUUUUCCAAUCCCAUCCAAUCCAUGUGUAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545430.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:5810   AUCCCACUCAAUCCACAUGGAUU   5832 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1235   AUCCCACUCAAUCCACAUGGAUU   1257 Target Full Sequence	1.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1205   AUCCCACUCAAUCCACAUGGAUU   1227 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:3759   AUCCUACUCAAUCCACAUAGAUU   3781 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:3754   AUCCUACUCAAUCCACAUAGAUU   3776 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:3472   AUCCUACUCAAUCCACAUAGAUU   3494 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:3486   AUCCUACUCAAUCCACAUAGAUU   3508 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1205   AUCCCACUCAAUCCACAUGGAUU   1227 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1087   AUCCCACUCAAUCCACAUGGAUU   1109 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1964   AUCCCACUCAAUCCACAUGGAUU   1986 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1964   AUCCCACUCAAUCCACAUGGAUU   1986 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:2506   AUCCCACUCAAUCCACAUGGAUU   2528 Target Full Sequence	1.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:2217   AUCCCACUCAAUCCACAUGGAUU   2239 Target Full Sequence	1.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1821   AUCCCACUCAAUCCACAUGGAUU   1843 Target Full Sequence	1.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1821   AUCCCACUCAAUCCACAUGGAUU   1843 Target Full Sequence	1.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1536   AUCCCACUCAAUCCACAUGGAUU   1558 Target Full Sequence	1.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1536   AUCCCACUCAAUCCACAUGGAUU   1558 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1421   AUCCCACUCAAUCCACAUGGAUU   1443 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||||||||||=||||||| targets:1472   AUCCCACUCAAUCCAUAUAGAUU   1494 Target Full Sequence	1.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||||||||||=||||||| targets:1472   AUCCCACUCAAUCCAUAUAGAUU   1494 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
EU949831.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:1019   AUCCUACUCAAUCCACAUAGAUU   1041 Target Full Sequence	1.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
BT069115.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:534   AUCCCACUCAAUCCACAUGGAUU   556 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1130   AUCCCACUCAAUCCACAUGGAUU   1152 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:1130   AUCCCACUCAAUCCACAUGGAUU   1152 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:182   AUCCCACUCAAUCCACAUGGAUU   204 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:880   AUCCCACUCAAUCCACAUGGAUU   902 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:751   AUCCCACUCAAUCCACAUGGAUU   773 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||=|||||||||||||||||| targets:241   AUCCUACUCAAUCCACAUAGAUU   263 Target Full Sequence	1.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:97   AUCCCACUCAAUCCACAUGGAUU   119 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
JB163466.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||||||||||=||||||| targets:104   AUCCCACUCAAUCCAUAUAGAUU   126 Target Full Sequence	1.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
HI403090.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||||||||||=||||||| targets:104   AUCCCACUCAAUCCAUAUAGAUU   126 Target Full Sequence	1.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||||||||||=||||||| targets:104   AUCCCACUCAAUCCAUAUAGAUU   126 Target Full Sequence	1.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	1.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	1.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	1.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
JB166350.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
HI405889.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:7266   AUCCCACUUAAUCCACAUGGAUU   7288 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:7255   AUCCCACUUAAUCCACAUGGAUU   7277 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:7151   AUCCCACUUAAUCCACAUGGAUU   7173 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:66   AUCCCGCUCAAUCCACAUGGAUU   88 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:3444   AUCUCACUCAAUCCACAUGGAUU   3466 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   *|=||*||||||||||||=|||| targets:3518   UUUCCUCUCAAUCCACAUGGAUU   3540 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:3413   AUCUCACUCAAUCCACAUGGAUU   3435 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   *|=||*||||||||||||=|||| targets:3487   UUUCCUCUCAAUCCACAUGGAUU   3509 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:3400   AUCUCACUCAAUCCACAUGGAUU   3422 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   *|=||*||||||||||||=|||| targets:3474   UUUCCUCUCAAUCCACAUGGAUU   3496 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:2910   AUCCCGCUCAAUCCACAUGGAUU   2932 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:2806   AUCCCGCUCAAUCCACAUGGAUU   2828 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2354   AUCUCACUCAAUCCACAUGGAUU   2376 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2294   AUCUCACUCAAUCCACAUGGAUU   2316 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2287   AUCUCACUCAAUCCACAUGGAUU   2309 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2159   AUCUCACUCAAUCCACAUGGAUU   2181 Target Full Sequence	1.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2158   AUCUCACUCAAUCCACAUGGAUU   2180 Target Full Sequence	1.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:2146   AUCCCGCUCAAUCCACAUGGAUU   2168 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:2086   AUCUCACUCAAUCCACAUGGAUU   2108 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT018903.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:2035   AUCCCGCUCAAUCCACAUGGAUU   2057 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:2053   AUCCCGCUCAAUCCACAUGGAUU   2075 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:1958   AUCCCGCUCAAUCCACAUGGAUU   1980 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:1892   AUCCCGCUCAAUCCACAUGGAUU   1914 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:1625   AUCCCGCUCAAUCCACAUGGAUU   1647 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:1449   AUCUCACUCAAUCCACAUGGAUU   1471 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:1449   AUCUCACUCAAUCCACAUGGAUU   1471 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068797.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:1134   AUCCCGCUCAAUCCACAUGGAUU   1156 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||=||||||||||||=|||| targets:1134   AUCCCGCUCAAUCCACAUGGAUU   1156 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:252   AUCUCACUCAAUCCACAUGGAUU   274 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:461   AUCUCACUCAAUCCACAUGGAUU   483 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
JB163480.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403019.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||||||||=|||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
HI405878.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	1.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	1.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	1.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	1.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	1.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	1.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
HI405893.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	1.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||||||||||||||=|||| targets:22   AUCUCACUCAAUCCACAUGGAUU   44 Target Full Sequence	1.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||=||||||||=||||||| targets:1202   AUCUCAUUCAAUCCAUAUAGAUU   1224 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=||=||||||||=||||||| targets:950   AUCUCAUUCAAUCCAUAUAGAUU   972 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:1833   AUCCCACCCAAUCCACAUGGAUU   1855 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:1817   AUCCCACCCAAUCCACAUGGAUU   1839 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:191   AUCCCACACAAUCCACAUGGAUU   213 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:1533   AUCCCACCCAAUCCACAUGGAUU   1555 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
EU952677.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*|||||||||||||||=|||| targets:991   AUACCACUCAAUCCACAUGGAUU   1013 Target Full Sequence	1.5	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT042439.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*|||||||||||||||=|||| targets:969   AUACCACUCAAUCCACAUGGAUU   991 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066125.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*|||||||||||||||=|||| targets:1078   AUACCACUCAAUCCACAUGGAUU   1100 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
HI409272.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUU   102 Target Full Sequence	2.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
JB169733.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUU   102 Target Full Sequence	2.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||||||*||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUU   102 Target Full Sequence	2.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
BT035134.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=|||*||||||||||=|||| targets:1222   AUCUCACCCAAUCCACAUGGAUU   1244 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=|||*||||||||||=|||| targets:1222   AUCUCACCCAAUCCACAUGGAUU   1244 Target Full Sequence	2.5	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=|||*||||||||||=|||| targets:1060   AUCUCACCCAAUCCACAUGGAUU   1082 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |||=|||*||||||||||=|||| targets:1027   AUCUCACCCAAUCCACAUGGAUU   1049 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT066229.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*=||||=|||||||||=|||| targets:2509   AUAUCACUUAAUCCACAUGGAUU   2531 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0109O13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175785.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*=||||=|||||||||=|||| targets:2509   AUAUCACUUAAUCCACAUGGAUU   2531 Target Full Sequence	2.5	Zea mays Putative peptidyl-prolyl cis-trans isomerase and WD40 repeat domain family protein (LOC100383118), mRNA	NA	coding protein	psRNATarget
HI406824.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |*|||||*||||||||||||||| targets:73   AACCCACCCAAUCCACAUAGAUU   95 Target Full Sequence	1.0	Sequence 4949 from Patent EP2074227	NA	coding protein	psRNATarget
JB167285.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |*|||||*||||||||||||||| targets:73   AACCCACCCAAUCCACAUAGAUU   95 Target Full Sequence	1.0	Sequence 4949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238954.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   |*|||||*||||||||||||||| targets:73   AACCCACCCAAUCCACAUAGAUU   95 Target Full Sequence	1.0	Sequence 4949 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*||||*||||||||||=|||| targets:991   AUACCACCCAAUCCACAUGGAUU   1013 Target Full Sequence	2.5	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU976164.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*||||*||||||||||=|||| targets:991   AUACCACCCAAUCCACAUGGAUU   1013 Target Full Sequence	2.5	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
AY106055.1	ncRNA:23   UAGGGUGAGUUAGGUGUAUCUAA   1   ||*||||*||||||||||=|||| targets:987   AUACCACCCAAUCCACAUGGAUU   1009 Target Full Sequence	2.5	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget