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BaseInfo

ncRNA ID novel_zma_miR1953
Species Zea mays
Class miRNA
Genome position Chr9:152406197-152406245 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089715;SRR2287163;SRR2089701;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - ACUAAUCACGAUUAGUCGGACGAU - 24
Stem-loop(if miRNA) --                  GA G
  ACUAAUCACGAUUAGUCG  C A
  ||||||||||||||||||  | U
  UGGUUAGUGCUAAUUAGC  G U
CC                  AG U
Stem-loop sequence ACUAAUCACGAUUAGUCGGACGAUUUGGACGAUUAAUCGUGAUUGGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020540426.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:809   AUCGUCCGACUAAUCGUGAUUAGU   832

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020540423.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:809   AUCGUCCGACUAAUCGUGAUUAGU   832

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540425.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:809   AUCGUCCGACUAAUCGUGAUUAGU   832

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020540424.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:720   AUCGUCCGACUAAUCGUGAUUAGU   743

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020540431.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:809   AUCGUCCGACUAAUCGUGAUUAGU   832

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020540422.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||||||||||
targets:809   AUCGUCCGACUAAUCGUGAUUAGU   832

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235316.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||*|||||||
targets:28   AUCGUCCGACUAAUCGCGAUUAGU   51

1.5 Sequence 1311 from Patent EP2985353 NA coding protein psRNATarget
HI403186.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||*|||||||
targets:28   AUCGUCCGACUAAUCGCGAUUAGU   51

1.5 Sequence 1311 from Patent EP2074227 NA coding protein psRNATarget
JB163647.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||*|||||||
targets:28   AUCGUCCGACUAAUCGCGAUUAGU   51

1.5 Sequence 1311 from Patent EP2559767 NA coding protein psRNATarget
XM_020546379.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||*|||||||
targets:44   AUCGUCCGACUAAUCGCGAUUAGU   67

1.5 PREDICTED: Zea mays uncharacterized LOC103634963 (LOC103634963), mRNA NA coding protein psRNATarget
XM_008654484.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||||||||||||||*|||||||
targets:137   AUCGUCCGACUAAUCGCGAUUAGU   160

1.5 PREDICTED: Zea mays uncharacterized LOC103632744 (LOC103632744), mRNA NA coding protein psRNATarget
EU943325.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||||||||*|
targets:745   GUCGUCCGACUAAUCGUGAUUAAU   768

1.5 Zea mays clone 1599709 mRNA sequence NA coding protein psRNATarget
XM_020539261.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:1273   GUCGUCCGACUAAUCGCGAUUAGU   1296

1.5 PREDICTED: Zea mays uncharacterized LOC103629447 (LOC103629447), mRNA NA coding protein psRNATarget
XM_020539214.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||||||||*|
targets:1782   GUCGUCCGACUAAUCGUGAUUAAU   1805

1.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539213.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||||||||*|
targets:1782   GUCGUCCGACUAAUCGUGAUUAAU   1805

1.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539212.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||||||||*|
targets:1782   GUCGUCCGACUAAUCGUGAUUAAU   1805

1.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008646837.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:252   GUCGUCCGACUAAUCGCGAUUAGU   275

1.5 PREDICTED: Zea mays uncharacterized LOC103626427 (LOC103626427), mRNA NA coding protein psRNATarget
XM_008677323.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:518   GUCGUCCGACUAAUCGCGAUUAGU   541

1.5 PREDICTED: Zea mays uncharacterized LOC103651643 (LOC103651643), mRNA NA coding protein psRNATarget
XM_008677323.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||||||||*|
targets:1807   GUCGUCCGACUAAUCGUGAUUAAU   1830

1.5 PREDICTED: Zea mays uncharacterized LOC103651643 (LOC103651643), mRNA NA coding protein psRNATarget
XM_008677323.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =||||||||=||||||*|||||||
targets:1736   GUCGUCCGAUUAAUCGCGAUUAGU   1759

2.5 PREDICTED: Zea mays uncharacterized LOC103651643 (LOC103651643), mRNA NA coding protein psRNATarget
XM_008653826.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:4210   GUCGUCCGACUAAUCGCGAUUAGU   4233

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008653825.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:4213   GUCGUCCGACUAAUCGCGAUUAGU   4236

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008653824.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:4341   GUCGUCCGACUAAUCGCGAUUAGU   4364

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020541074.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:4784   GUCGUCCGACUAAUCGCGAUUAGU   4807

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008653820.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:4784   GUCGUCCGACUAAUCGCGAUUAGU   4807

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541072.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020541079.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X17, mRNA NA coding protein psRNATarget
XM_020541076.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020541071.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020541073.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020541075.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020541069.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020541070.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020541068.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008653823.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5211   GUCGUCCGACUAAUCGCGAUUAGU   5234

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541066.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =|||||||||||||||*|||||||
targets:5303   GUCGUCCGACUAAUCGCGAUUAGU   5326

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549584.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =||*||||||||||||*|||||||
targets:822   GUCAUCCGACUAAUCGCGAUUAGU   845

1.5 PREDICTED: Zea mays O-fucosyltransferase family protein (LOC100273815), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550128.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:218   AUCG-CCGACUAAUCGCGAUUAGU   240

1.5 PREDICTED: Zea mays uncharacterized LOC103649795 (LOC103649795), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550128.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:251   AUCG-CCGACUAAUCGCGAUUAGU   273

1.5 PREDICTED: Zea mays uncharacterized LOC103649795 (LOC103649795), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020551348.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:1859   AUCG-CCGACUAAUCGCGAUUAGU   1881

1.5 PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008678532.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:2161   AUCG-CCGACUAAUCGCGAUUAGU   2183

1.5 PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008678531.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:2177   AUCG-CCGACUAAUCGCGAUUAGU   2199

1.5 PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008678530.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:2215   AUCG-CCGACUAAUCGCGAUUAGU   2237

1.5 PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008678529.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||-|||||||||||*|||||||
targets:2221   AUCG-CCGACUAAUCGCGAUUAGU   2243

1.5 PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539497.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  =||*||||||||||||||||||*|
targets:1037   GUCCUCCGACUAAUCGUGAUUAAU   1060

1.5 PREDICTED: Zea mays uncharacterized LOC100276587 (LOC100276587), mRNA NA coding protein psRNATarget
XM_020539497.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||=**||||||||||||||||||*
targets:3927   AUUAGCCGACUAAUCGUGAUUAGG   3950

1.0 PREDICTED: Zea mays uncharacterized LOC100276587 (LOC100276587), mRNA NA coding protein psRNATarget
BT042602.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  |||**||||||||||||||||||*
targets:91   AUCAGCCGACUAAUCGUGAUUAGG   114

1.0 Zea mays full-length cDNA clone ZM_BFb0366K05 mRNA, complete cds NA coding protein psRNATarget
XM_008666461.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ***|*|||||||||||||||||||
targets:3396   UAAGGCCGACUAAUCGUGAUUAGU   3419

0.0 PREDICTED: Zea mays uncharacterized LOC103643308 (LOC103643308), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666460.2
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ***|*|||||||||||||||||||
targets:3396   UAAGGCCGACUAAUCGUGAUUAGU   3419

0.0 PREDICTED: Zea mays uncharacterized LOC103643308 (LOC103643308), transcript variant X1, mRNA NA coding protein psRNATarget
EU944953.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  ||||**|||||||||*||||||||
targets:373   AUCGGGCGACUAAUCUUGAUUAGU   396

2.5 Zea mays clone 236112 mRNA sequence NA coding protein psRNATarget
EU946502.1
ncRNA:24   UA-GCAGGCUGAUUAGCACUAAUCA   1
  ||-||*|=|||||||||*|||||||
targets:655   AUACGGCUGACUAAUCGCGAUUAGU   679

2.5 Zea mays clone 314083 mRNA sequence NA coding protein psRNATarget
NM_001351047.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  **=|*|||||||||||*|||||||
targets:4604   CCUGCCCGACUAAUCGCGAUUAGU   4627

1.5 Zea mays vam6/Vps39-like protein (LOC100275187), mRNA NA coding protein psRNATarget
AY109632.1
ncRNA:24   UAGCAGGCUGAUUAGCACUAAUCA   1
  |*||-||||=||||||*|||||||
targets:218   AGCG-CCGAUUAAUCGCGAUUAGU   240

2.5 Zea mays CL972_1 mRNA sequence NA coding protein psRNATarget
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