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BaseInfo

ncRNA ID	novel_zma_miR1952
Species	Zea mays
Class	miRNA
Genome position	Chr9:147802879-147802942 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CCGUUUUUUUAGUUGUCGCUGGAU - 24
Stem-loop(if miRNA)	--       UU                  U  A   CCGUUUU  UAGUUGUCGCUGGAUAGU UA U   |||||||  |||||||||||||||||| ||   GGCAAAA  AUCAACAGCGACCUAUCA GU U UA       --                  C  U
Stem-loop sequence	CCGUUUUUUUAGUUGUCGCUGGAUAGUUUAAUUUUGCACUAUCCAGCGACAACUAAAAACGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239399.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:56   AUCCAGCGACAACUAAAAAAACGG   79 Target Full Sequence	0.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
HI407269.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:56   AUCCAGCGACAACUAAAAAAACGG   79 Target Full Sequence	0.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
JB167730.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:56   AUCCAGCGACAACUAAAAAAACGG   79 Target Full Sequence	0.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:1315   AUCCAGCGACAACUAAAAAAACGG   1338 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:1482   AUCCAGCGACAACUAAAAAAACGG   1505 Target Full Sequence	0.0	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||||||||||||||||| targets:1482   AUCCAGCGACAACUAAAAAAACGG   1505 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
LQ239341.1	ncRNA:24   UAGGUCGCUGUUGA-UUUUUUUGCC   1   ||||||||||||||-|||||||||| targets:56   AUCCAGCGACAACUUAAAAAAACGG   80 Target Full Sequence	3.0	Sequence 5336 from Patent EP2985353	NA	coding protein	psRNATarget
HI407211.1	ncRNA:24   UAGGUCGCUGUUGA-UUUUUUUGCC   1   ||||||||||||||-|||||||||| targets:56   AUCCAGCGACAACUUAAAAAAACGG   80 Target Full Sequence	3.0	Sequence 5336 from Patent EP2074227	NA	coding protein	psRNATarget
JB167672.1	ncRNA:24   UAGGUCGCUGUUGA-UUUUUUUGCC   1   ||||||||||||||-|||||||||| targets:56   AUCCAGCGACAACUUAAAAAAACGG   80 Target Full Sequence	3.0	Sequence 5336 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008669416.2	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||||=||*||||||||||| targets:539   AUCCAGCGAUAAAUAAAAAAACGG   562 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001352327.1	ncRNA:24   UAGGUCGCUGUUGAUUUUUUUGCC   1   |||||||*||||||||||||||*| targets:2719   AUCCAGCAACAACUAAAAAAACAG   2742 Target Full Sequence	2.5	Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA	NA	coding protein	psRNATarget