Search result

BaseInfo

ncRNA ID	novel_zma_miR1949
Species	Zea mays
Class	miRNA
Genome position	Chr9:134258630-134258791 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714;SRR2089700;SRR2089701
Length	21
Mature sequence(if miRNA)	142 - UGAGGUGAUUGAGGACAUCAU - 162
Stem-loop(if miRNA)	--        A               C        A        C      U    AAAAA  G       A       CUCC   GAUGUUCU AAUUACCUUAGAAAA AUGAACUU AAAUUCAA UUUUAC UGGA     AC AAAAAGG CAAAUCU    C   |||||||| ||||||||||||||| |||||||| |||||||| |||||| ||||     || ||||||| |||||||   CUACAGGA UUAGUGGAGUCUUUU UACUUGAA UUUAAGUU AAAAUG ACUU     UG UUUUUCC GUUUAGA    U UA        G               A        C        A      C    --CUC  -       -       AUAA
Stem-loop sequence	GAUGUUCUAAAUUACCUUAGAAAACAUGAACUUAAAAUUCAACUUUUACUUGGAAAAAAACGAAAAAGGACAAAUCUCUCCCUAAUAAGAUUUGCCUUUUUGUCUCUUCACGUAAAAAUUGAAUUUCAAGUUCAUAUUUUCUGAGGUGAUUGAGGACAUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542332.1	ncRNA:21   UACUACAGGAGUUAGUGGAGU   1   *****|||||||||||||||| targets:100   CACCAGUCCUCAAUCACCUCA   120 Target Full Sequence	3.0	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008657214.2	ncRNA:21   UACUACAGGAGUUAGUGGAGU   1   *****|||||||||||||||| targets:101   CACCAGUCCUCAAUCACCUCA   121 Target Full Sequence	3.0	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657213.2	ncRNA:21   UACUACAGGAGUUAGUGGAGU   1   *****|||||||||||||||| targets:101   CACCAGUCCUCAAUCACCUCA   121 Target Full Sequence	3.0	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657212.2	ncRNA:21   UACUACAGGAGUUAGUGGAGU   1   *****|||||||||||||||| targets:101   CACCAGUCCUCAAUCACCUCA   121 Target Full Sequence	3.0	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X1, mRNA	NA	coding protein	psRNATarget