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BaseInfo

ncRNA ID	novel_zma_miR1948
Species	Zea mays
Class	miRNA
Genome position	Chr9:133377126-133377174 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	26 - GGAUUGGAAGAGAUUGAUACGGAU - 49
Stem-loop(if miRNA)	--    -      A          A   UUGU UCGGUU UUUUCAAUCC U   |||| |||||| ||||||||||   GGCA AGUUAG GAAGGUUAGG A UA    U      A          U
Stem-loop sequence	UUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAAGAGAUUGAUACGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064935.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   |||||||||||||*|||||||||| targets:829   AUCCGUAUCAAUCCCUUCCAAUCC   852 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   |||||||||||||||*|||||||| targets:1001   AUCCGUAUCAAUCUCCUCCAAUCC   1024 Target Full Sequence	1.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EZ092886.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   |||=*|||||||||||||||||*| targets:61   AUCUAUAUCAAUCUCUUCCAAUAC   84 Target Full Sequence	1.5	TSA: Zea mays contig28535, mRNA sequence	NA	coding protein	psRNATarget
EU951843.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   *|==*|*|||||||||||||||=| targets:541   UUUUUUUUCAAUCUCUUCCAAUUC   564 Target Full Sequence	2.5	Zea mays clone 1061479 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI405825.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3950 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237978.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3973 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237955.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3950 from Patent EP2985353	NA	coding protein	psRNATarget
HI405848.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3973 from Patent EP2074227	NA	coding protein	psRNATarget
JB166309.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3973 from Patent EP2559767	NA	coding protein	psRNATarget
JB166286.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:86   AUUUUUUUCAAUCUCAUCCAAUCC   109 Target Full Sequence	2.5	Sequence 3950 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008667530.2	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:2810   AUUUUUUUCAAUCUCAUCCAAUCC   2833 Target Full Sequence	2.5	PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA	NA	coding protein	psRNATarget
EU946263.1	ncRNA:24   UAGGCAUAGUUAGAGAAGGUUAGG   1   ||==*|*||||||||*|||||||| targets:590   AUUUUUUUCAAUCUCAUCCAAUCC   613 Target Full Sequence	2.5	Zea mays clone 302506 mRNA sequence	NA	coding protein	psRNATarget