ncRNA ID | osa-miR5834 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:4758584-4758701 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 88 - ACGGAUGUAGAAAUUGGUGAU - 108 |
Stem-loop(if miRNA) |
UAA    -CA  C       --      G U    --UUA     --G  UUA  UCAAGAA    CUUG   CA GGAUGUA  GAAAUU G GAUU     CAGAG   CG   GC       U    ||||   || |||||||  |||||| | ||||     |||||   ||   ||    GAAC   GU CCUACAU  UUUUAA U CUAG     GUCUC   GC   CG       U AAA    AAA  C       UG      G -    UAUAA     ACA  UUA  UAUGAUA |
Stem-loop sequence | UAACUUGCACACGGAUGUAGAAAUUGGUGAUUUUACAGAGGCGUUAGCUCAAGAAUUAUAGUAUGCAUUCGACACUCUGAAUAUGAUCUGAAUUUUGUUACAUCCCUGAAACAAGAAA |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |