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BaseInfo

ncRNA ID osa-miR5834
Species Oryza sativa
Class miRNA
Genome position Chr6:4758584-4758701 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 88 - ACGGAUGUAGAAAUUGGUGAU - 108
Stem-loop(if miRNA) UAA    -CA  C       --      G U    --UUA     --G  UUA  UCAAGAA
   CUUG   CA GGAUGUA  GAAAUU G GAUU     CAGAG   CG   GC       U
   ||||   || |||||||  |||||| | ||||     |||||   ||   ||
   GAAC   GU CCUACAU  UUUUAA U CUAG     GUCUC   GC   CG       U
AAA    AAA  C       UG      G -    UAUAA     ACA  UUA  UAUGAUA
Stem-loop sequence UAACUUGCACACGGAUGUAGAAAUUGGUGAUUUUACAGAGGCGUUAGCUCAAGAAUUAUAGUAUGCAUUCGACACUCUGAAUAUGAUCUGAAUUUUGUUACAUCCCUGAAACAAGAAA

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).