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BaseInfo

ncRNA ID novel_zma_miR1930
Species Zea mays
Class miRNA
Genome position Chr3:60185817-60185866 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647343
Length 24
Mature sequence(if miRNA) 1 - AGAACCGAACAAGCCCUUAGGGUU - 24
Stem-loop(if miRNA) --      --   C   -     A  G
  AGAACC  GAA AAG CCCUU GG U
  ||||||  ||| ||| ||||| || U
  UUUUGG  CUU UUC GGGGA CC U
AU      GA   -   U     -  U
Stem-loop sequence AGAACCGAACAAGCCCUUAGGGUUUUCCAGGGGUCUUUUCAGGGUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008673290.2
ncRNA:24   UUG---GGAUUCCCGAACAAGCCAAGA   1
  |=|---|||||||||||||||||||||
targets:1888   AGCUUACCUAAGGGCUUGUUCGGUUCU   1914

0.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   UUG---GGAUUCCCGAACAAGCCAAGA   1
  |=|---|||||||||||||||||||||
targets:1888   AGCUUACCUAAGGGCUUGUUCGGUUCU   1914

0.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||||-=|=|||||||||||||||||
targets:1530   AACCAUUGAGGGCUUGUUCGGUUCU   1554

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||||
targets:825   AACUAGCUGAGGGCUUGUUCGGUUCU   850

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959258.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||||
targets:771   AACUAGCUGAGGGCUUGUUCGGUUCU   796

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||||
targets:771   AACUAGCUGAGGGCUUGUUCGGUUCU   796

1.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||||
targets:772   AACUAGCUGAGGGCUUGUUCGGUUCU   797

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||||
targets:844   AACUAGCUGAGGGCUUGUUCGGUUCU   869

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ||=|=|||||||||||||||||*|
targets:1033   AAUCUUAAGGGCUUGUUCGGUUAU   1056

1.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ||=|=|||||||||||||||||*|
targets:1033   AAUCUUAAGGGCUUGUUCGGUUAU   1056

1.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ||=|=|||||||||||||||||*|
targets:1524   AAUCUUAAGGGCUUGUUCGGUUAU   1547

1.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
EU959055.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |||=--||=|||||||||||||||*|
targets:773   AACUAGCUGAGGGCUUGUUCGGUUYU   798

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU953075.1
ncRNA:24   UUG---GGAUUCCCGAACAAGCCAAGA   1
  ||=---|||*|||||||||||||||||
targets:907   AAUUCUCCUCAGGGCUUGUUCGGUUCU   933

1.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
EU942557.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **|=||||||||||||||||||*|
targets:472   CUCUCUAAGGGCUUGUUCGGUUAU   495

1.5 Zea mays clone 1517970 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **=|||*|||||||||||||||||
targets:739   UCUCCUCAGGGCUUGUUCGGUUCU   762

1.0 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **=|||*|||||||||||||||||
targets:790   UCUCCUCAGGGCUUGUUCGGUUCU   813

1.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **=|||*|||||||||||||||||
targets:790   UCUCCUCAGGGCUUGUUCGGUUCU   813

1.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **|=|||*||||||||||||||||
targets:872   CCCUCUACGGGCUUGUUCGGUUCU   895

1.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **||=|||||||||||||||||*|
targets:1934   CUCCUUAAGGGCUUGUUCGGUUAU   1957

1.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008659088.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=||||||||||||||||*|||*
targets:1940   CAUCCUAAGGGCUUGUUCGUUUCA   1963

2.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4 (LOC103636761), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **|=|||*||||||||||||||||
targets:1664   CCCUCUACGGGCUUGUUCGGUUCU   1687

1.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
EU942632.1
ncRNA:24   UUG-GGAUUCCCGAACAAGCCAAGA   1
  |||-==|||||||||||||||||**
targets:159   AACAUUUAAGGGCUUGUUCGGUUAG   183

2.5 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
BT062183.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *||*||||||||||||||||||*|
targets:151   CACACUAAGGGCUUGUUCGGUUAU   174

1.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
EU976224.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*|||||||||||||||*|||*
targets:751   AACGCUAAGGGCUUGUUCGUUUCA   774

2.5 Zea mays clone 688476 mRNA sequence NA coding protein psRNATarget
XM_008657651.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*||||||||*||||||||||*
targets:931   AACACUAAGGGCCUGUUCGGUUCG   954

2.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657650.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*||||||||*||||||||||*
targets:1010   AACACUAAGGGCCUGUUCGGUUCG   1033

2.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA NA coding protein psRNATarget
BT070074.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*|||||||||||||||*|||*
targets:940   AACGCUAAGGGCUUGUUCGUUUCA   963

2.5 Zea mays full-length cDNA clone ZM_BFb0372E16 mRNA, complete cds NA coding protein psRNATarget
XM_008657652.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*||||||||*||||||||||*
targets:1052   AACACUAAGGGCCUGUUCGGUUCG   1075

2.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020542405.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*||||||||*||||||||||*
targets:1120   AACACUAAGGGCCUGUUCGGUUCG   1143

2.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020542404.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*||||||||*||||||||||*
targets:1130   AACACUAAGGGCCUGUUCGGUUCG   1153

2.5 PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008659614.2
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |=||--=|||||||||||||||||*|
targets:88   AGCCGUUUAAGGGCUUGUUCGGUUAU   113

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
NM_001154059.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *=|*=|||||||||||||||||=|
targets:1973   UGCAUUAAGGGCUUGUUCGGUUUU   1996

1.5 Zea mays kinetoplast-associated protein (LOC100281140), mRNA NA coding protein psRNATarget
EU955720.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *=|*=|||||||||||||||||=|
targets:1973   UGCAUUAAGGGCUUGUUCGGUUUU   1996

1.5 Zea mays clone 1543287 kinetoplast-associated protein mRNA, complete cds NA coding protein psRNATarget
XM_020549619.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||*|||||||||||||||*|||*
targets:3718   AACGCUAAGGGCUUGUUCGUUUCA   3741

2.5 PREDICTED: Zea mays glucosamine fructose-6-phosphate aminotransferase1 (LOC100276333), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |=||=|*|||||||||||||||*|
targets:1871   AGCCUUUAGGGCUUGUUCGGUUAU   1894

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **||=|*=||||||||||||||||
targets:346   CUCCUUUGGGGCUUGUUCGGUUCU   369

2.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||||-||*|||||||||||||||*|
targets:649   AACCACUUAGGGCUUGUUCGGUUAU   673

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
NM_001175832.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **||=|=|||||||||||||||*|
targets:1601   CUCCUUGAGGGCUUGUUCGGUUAU   1624

2.5 Zea mays putative cytochrome P450 superfamily protein (LOC100383167), mRNA NA coding protein psRNATarget
EU963392.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **||=|=|||||||||||||||*|
targets:1601   CUCCUUGAGGGCUUGUUCGGUUAU   1624

2.5 Zea mays clone 261790 cytochrome P450 CYP71K14 mRNA, complete cds NA coding protein psRNATarget
EZ101759.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *=||||*|||||||||||||||*|
targets:5   CGCCCUUAGGGCUUGUUCGGUUAU   28

2.5 TSA: Zea mays contig37415, mRNA sequence NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=|||||||*|||||||||||*|
targets:1435   UAUCCUAAGGCCUUGUUCGGUUAU   1458

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=|||||||*|||||||||||*|
targets:1435   UAUCCUAAGGCCUUGUUCGGUUAU   1458

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *||=||||||*|||||||||||*|
targets:1800   CACUCUAAGGUCUUGUUCGGUUAU   1823

2.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=|||||||*|||||||||||*|
targets:2405   UAUCCUAAGGCCUUGUUCGGUUAU   2428

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|||=|*|||||||||||||||*|
targets:2705   CACCUUUAGGGCUUGUUCGGUUAU   2728

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|||=|*|||||||||||||||*|
targets:2809   CACCUUUAGGGCUUGUUCGGUUAU   2832

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
EU942657.1
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:142   AAUCACUAAGGCCUUGUUCGGUUAU   166

2.5 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
AY106606.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **===|||||||||||||||||*|
targets:416   CUUUUUAAGGGCUUGUUCGGUUGU   439

1.5 Zea mays PCO135617 mRNA sequence NA coding protein psRNATarget
BT085493.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  **===|||||||||||||||||*|
targets:696   CUUUUUAAGGGCUUGUUCGGUUGU   719

1.5 Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds NA coding protein psRNATarget
EU949831.1
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:920   AAUCACUAAGGCCUUGUUCGGUUAU   944

2.5 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:3387   AAUCACUAAGGCCUUGUUCGGUUAU   3411

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:3373   AAUCACUAAGGCCUUGUUCGGUUAU   3397

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:3655   AAUCACUAAGGCCUUGUUCGGUUAU   3679

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   UUGG-GAUUCCCGAACAAGCCAAGA   1
  ||=|-||||||*|||||||||||*|
targets:3660   AAUCACUAAGGCCUUGUUCGGUUAU   3684

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
EZ064016.1
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  |=||--||*|||||||||||||||*|
targets:22   AGCCAUCUCAGGGCUUGUUCGGUUAU   47

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
XM_008649755.2
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ****||||||*||||||||*||||
targets:887   UUGACUAAGGCCUUGUUCGUUUCU   910

2.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X2, mRNA NA coding protein psRNATarget
LQ239268.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=*=|||||||||||||||||**
targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29

2.5 Sequence 5263 from Patent EP2985353 NA coding protein psRNATarget
HI407138.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=*=|||||||||||||||||**
targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29

2.5 Sequence 5263 from Patent EP2074227 NA coding protein psRNATarget
JB167599.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  *|=*=|||||||||||||||||**
targets:6   CAUAUUAAGGGCUUGUUCGGUUAG   29

2.5 Sequence 5263 from Patent EP2559767 NA coding protein psRNATarget
XM_020539029.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ****||||||*||||||||*||||
targets:1004   UUGACUAAGGCCUUGUUCGUUUCU   1027

2.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   UUGG--GAUUCCCGAACAAGCCAAGA   1
  ||||--=||||*||||||||||||*|
targets:1132   AACCACUUAAGAGCUUGUUCGGUUAU   1157

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
BT040160.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  ||=**|||||||||||||||||*|
targets:944   AAUGGUAAGGGCUUGUUCGGUUAU   967

1.5 Zea mays full-length cDNA clone ZM_BFc0068H20 mRNA, complete cds NA coding protein psRNATarget
EU954940.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||=*|||||*|||||||||||*|
targets:972   AACUGUAAGGCCUUGUUCGGUUAU   995

2.5 Zea mays clone 1494218 tumor-related protein mRNA, complete cds NA coding protein psRNATarget
NM_001153881.1
ncRNA:24   UUGGGAUUCCCGAACAAGCCAAGA   1
  |||=*|||||*|||||||||||*|
targets:972   AACUGUAAGGCCUUGUUCGGUUAU   995

2.5 Zea mays Tumor protein (LOC100280961), mRNA NA coding protein psRNATarget