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BaseInfo

ncRNA ID novel_zma_miR1928
Species Zea mays
Class miRNA
Genome position Chr8:117110926-117111034 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089713
Length 24
Mature sequence(if miRNA) 86 - AUUUGGUGACAAGGGGAUCCCGGA - 109
Stem-loop(if miRNA) --         - AAG          A                           AA
  AUUUGGUGA C   GGGAUCCCGG AGGAUCGGAGGGGAUUGAGGGGGAAAU  A
  ||||||||| |   |||||||||| |||||||||||||||||||||||||||
  UAAACCACU G   CCCUAGGGCC UCCUAGCUUCCUCUAACUCCCCCUUUA  C
AC         A --G          C                           AU
Stem-loop sequence AUUUGGUGACAAGGGGAUCCCGGAAGGAUCGGAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCUCCUUCGAUCCUCCCGGGAUCCCGGAUCACCAAAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170124.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114

0.0 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
HI409663.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114

0.0 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
LQ241793.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114

0.0 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:845   CCCGGGAUCCCCUUGUCACCAAAU   868

0.0 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:884   CCCGGGAUCCCCUUGUCACCAAAU   907

0.0 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:889   CCCGGGAUCCCCUUGUCACCAAAU   912

0.0 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:889   CCCGGGAUCCCCUUGUCACCAAAU   912

0.0 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
EU953234.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||||||||||||||||||||||
targets:1494   CCCGGGAUCCCCUUGUCACCAAAU   1517

0.0 Zea mays clone 1392496 mRNA sequence NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AG-GCCCUAGGGGAACAGUGGUUUA   1
  ||-||||||||||||||||||||||
targets:100   UCUCGGGAUCCCCUUGUCACCAAAU   124

0.0 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
EU973567.1
ncRNA:24   AG--GCCCUAGGGGAACAGUGGUUUA   1
  ||--||||||||||||||||||||||
targets:107   UCUACGGGAUCCCCUUGUCACCAAAU   132

0.0 Zea mays clone 401029 mRNA sequence NA coding protein psRNATarget
EU945995.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  ||||*|||||||||||||||||||
targets:398   UCCGUGAUCCCCUUGUCACCAAAU   421

0.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
XM_008649581.2
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  ||||*||||||||||||=||||||
targets:1822   UCCGUGAUCCCCUUGUCGCCAAAU   1845

1.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
EZ106816.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*|||||||||||||||||||
targets:295   CCCGUGAUCCCCUUGUCACCAAAU   318

0.0 TSA: Zea mays contig42474, mRNA sequence NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  ||||*|||||*|||||||||||||
targets:155   UCCGUGAUCCACUUGUCACCAAAU   178

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  ||||*|||||*|||||||||||||
targets:155   UCCGUGAUCCACUUGUCACCAAAU   178

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  ||||*|||||*|||||||||||||
targets:155   UCCGUGAUCCACUUGUCACCAAAU   178

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
JB163888.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1552 from Patent EP2559767 NA coding protein psRNATarget
LQ235557.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1552 from Patent EP2985353 NA coding protein psRNATarget
LQ235430.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1425 from Patent EP2985353 NA coding protein psRNATarget
HI403427.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1552 from Patent EP2074227 NA coding protein psRNATarget
JB163761.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1425 from Patent EP2559767 NA coding protein psRNATarget
HI403300.1
ncRNA:24   AGGCCCUAGGGGAACAGUGGUUUA   1
  *|||*||*|=||||||||||||||
targets:55   CCCGUGACCUCCUUGUCACCAAAU   78

2.0 Sequence 1425 from Patent EP2074227 NA coding protein psRNATarget
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