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BaseInfo

ncRNA ID novel_zma_miR1925
Species Zea mays
Class miRNA
Genome position Chr3:45991442-45991610 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - ACUGGUGGUUAUCUUAACACAACC - 24
Stem-loop(if miRNA) --                 C                                 G     -G  GUA  AG          A    C
  ACUGGUGGUUAUCUUAA ACAACCGCCAGUGGAAAUAGGGUAUUUACACUG CGGUU  GU   AC  AACCGCCAGU GAAA C
  ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  ||   ||  |||||||||| ||||
  UGACCGCCAAUAGAAUU UGUUGGCGGUCACCUUUAUCCCAUAAAUGUGAC GCCAA  CA   UG  UUGGCGGUCA CUUU A
GG                 A                                 -     GA  AUG  -G          C    A
Stem-loop sequence ACUGGUGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGGUAUUUACACUGGCGGUUGGUGUAACAGAACCGCCAGUAGAAACCAAUUUCCACUGGCGGUUGGUGUAACAGAACCGCAGUGUAAAUACCCUAUUUCCACUGGCGGUUGUAUUAAGAUAACCGCCAGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063235.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:272   GGAAUUGUUAUGGUAACCACCAGU   295

2.5 Zea mays full-length cDNA clone ZM_BFc0041B21 mRNA, complete cds NA coding protein psRNATarget
BT063734.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:476   GGAAUUGUUAUGGUAACCACCAGU   499

2.5 Zea mays full-length cDNA clone ZM_BFc0101P15 mRNA, complete cds NA coding protein psRNATarget
BT068916.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:273   GGAAUUGUUAUGGUAACCACCAGU   296

2.5 Zea mays full-length cDNA clone ZM_BFb0272E21 mRNA, complete cds NA coding protein psRNATarget