Search result

BaseInfo

ncRNA ID	novel_zma_miR1911
Species	Zea mays
Class	miRNA
Genome position	Chr8:171172617-171172672 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	20
Mature sequence(if miRNA)	1 - ACCAAACACACUCUUAUAGU - 20
Stem-loop(if miRNA)	--                UAG  GGCUU   ACCAAACACACUCUUA   UC     A   ||||||||||||||||   ||     G   UGGUUUGUGUGGGAAU   AG     A GU                -CA  AACAC
Stem-loop sequence	ACCAAACACACUCUUAUAGUCGGCUUAGACACAAGAACUAAGGGUGUGUUUGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018820.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   *|||||=|=||||||||||| targets:298   UCUAUAGGGGUGUGUUUGGU   317 Target Full Sequence	2.5	Zea mays clone EL01N0532C04.d mRNA sequence	NA	coding protein	psRNATarget
AY107455.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   |*||*||||||||||||||| targets:473   AAUACAAGAGUGUGUUUGGU   492 Target Full Sequence	2.0	Zea mays PCO135182 mRNA sequence	NA	coding protein	psRNATarget
BT039537.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   |*||*||||||||||||||| targets:1147   AAUACAAGAGUGUGUUUGGU   1166 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0018E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT033321.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   |*||*||||||||||||||| targets:1213   AAUACAAGAGUGUGUUUGGU   1232 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0084J09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136709.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   |*||*||||||||||||||| targets:1213   AAUACAAGAGUGUGUUUGGU   1232 Target Full Sequence	2.0	Zea mays uncharacterized LOC100191275 (pco135182), mRNA	NA	coding protein	psRNATarget
XM_020541830.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   |*||*||||||||||||||| targets:1221   AAUACAAGAGUGUGUUUGGU   1240 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100191275 (pco135182), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ099905.1	ncRNA:20   UGAUAUUCUCACACAAACCA   1   =||*|||*|||||||||||| targets:276   GCUUUAAUAGUGUGUUUGGU   295 Target Full Sequence	2.5	TSA: Zea mays contig35560, mRNA sequence	NA	coding protein	psRNATarget