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BaseInfo

ncRNA ID	novel_zma_miR1910
Species	Zea mays
Class	miRNA
Genome position	Chr8:15133515-15133579 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089714
Length	24
Mature sequence(if miRNA)	1 - UUCACCGGACUGUUUGGUGUGCCA - 24
Stem-loop(if miRNA)	--UU        U        -   C  C         CACCGGAC GUUUGGUG UGC AC GGACA     |||||||| |||||||| ||| || ||||G     GUGGCCUG CAGGCCAC ACG UG CCUGU CCAC        U        C   -  A
Stem-loop sequence	UUCACCGGACUGUUUGGUGUGCCACCGGACAGUGUCCAGUGCACCACCGGACUGUCCGGUGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409410.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||||||||==||||||||||||| targets:13   UGGCACACCGGACAGUCCGGUGAA   36 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||||||||==||||||||||||| targets:13   UGGCACACCGGACAGUCCGGUGAA   36 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||||||||==||||||||||||| targets:13   UGGCACACCGGACAGUCCGGUGAA   36 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||||||||==||||||||||||| targets:698   UGGCACACCGGACAGUCCGGUGAA   721 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||==||||==||||||||||||| targets:824   UGGUGCACCGGACAGUCCGGUGAA   847 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   |||==||||==||||||||||||| targets:824   UGGUGCACCGGACAGUCCGGUGAA   847 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:602   GUGCACACCGGACAGUCCGGUGAA   625 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:738   GUGCACACCGGACAGUCCGGUGAA   761 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:738   GUGCACACCGGACAGUCCGGUGAA   761 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:716   GUGCACACCGGACAGUCCGGUGAA   739 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:716   GUGCACACCGGACAGUCCGGUGAA   739 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   ACCGUG-UGGUUUGUCAGGCCACUU   1   **||||-||||=||||||||||||| targets:727   GUGCACCACCAGACAGUCCGGUGAA   751 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:699   GUGCACACCGGACAGUCCGGUGAA   722 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:699   GUGCACACCGGACAGUCCGGUGAA   722 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:563   GUGCACACCGGACAGUCCGGUGAA   586 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:563   GUGCACACCGGACAGUCCGGUGAA   586 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:411   GUGCACACCGGACAGUCCGGUGAA   434 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   **|||||||==||||||||||||| targets:4611   GUGCACACCGGACAGUCCGGUGAA   4634 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||||*||=|==||||||||||||| targets:623   UGGCUCAUCGGACAGUCCGGUGAA   646 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||*|*||=|==||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAA   723 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||||*||=|==||||||||||||| targets:623   UGGCUCAUCGGACAGUCCGGUGAA   646 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||*|*||=|==||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAA   723 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||*=*||||==||||||||||||| targets:683   UGCUUCACCGGACAGUCCGGUGAA   706 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   *|*|*||||=|||||||||||||* targets:749   AGACUCACCGAACAGUCCGGUGAU   772 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ||*|*||||==||||||||||||| targets:27   UGACUCACCGGACAGUCCGGUGAA   50 Target Full Sequence	2.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:24   ACCGUGUGGUUUGUCAGGCCACUU   1   ***|=|||||=|||||||||||*| targets:39   GCACGCACCAGACAGUCCGGUGCA   62 Target Full Sequence	2.5	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
JB170098.1	ncRNA:19   GUGGUUUGUCAGGCCACUU   1   ||||==||||||||||||| targets:1   CACCGGACAGUCCGGUGAA   19 Target Full Sequence	2.0	Sequence 7762 from Patent EP2559767	NA	coding protein	psRNATarget
HI409637.1	ncRNA:19   GUGGUUUGUCAGGCCACUU   1   ||||==||||||||||||| targets:1   CACCGGACAGUCCGGUGAA   19 Target Full Sequence	2.0	Sequence 7762 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241767.1	ncRNA:19   GUGGUUUGUCAGGCCACUU   1   ||||==||||||||||||| targets:1   CACCGGACAGUCCGGUGAA   19 Target Full Sequence	2.0	Sequence 7762 from Patent EP2985353	NA	coding protein	psRNATarget