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BaseInfo

ncRNA ID	novel_zma_miR1905
Species	Zea mays
Class	miRNA
Genome position	Chr3:44219012-44219127 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - UUGAUUUGGUGACAAGAGGAUCCC - 24
Stem-loop(if miRNA)	---          G  AA A                                     AA    UUGAUUUGGU AC  G GGAUCCCGAGAGGAUCGAAGGGGAUUGAGGGGGAAAU  A    |||||||||| ||  | |||||||||||||||||||||||||||||||||||||    GACUAAACCA UG  C CCUAGGGCUCUCCUAGCUUCCCCUAACUCCCCCUUUA  C CCG          A  GG -                                     AU
Stem-loop sequence	UUGAUUUGGUGACAAGAGGAUCCCGAGAGGAUCGAAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUUCGAUCCUCUCGGGAUCCCGGGUAACCAAAUCAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||| targets:104   GGGAUCCCCUUGUCACCAAAUCAA   127 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||| targets:112   GGGAUCCCCUUGUCACCAAAUCAA   135 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||| targets:1497   GGGAUCCCCUUGUCACCAAAUCAA   1520 Target Full Sequence	1.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ082583.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||||||||||=|||||||| targets:16   GUGAUCCUCUUGUCAUCAAAUCAA   39 Target Full Sequence	1.5	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:848   GGGAUCCCCUUGUCACCAAAUCAG   871 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:887   GGGAUCCCCUUGUCACCAAAUCAG   910 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |||||||*|||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||*|||||||||||||||| targets:298   GUGAUCCCCUUGUCACCAAAUCAA   321 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   CC-CUAGGAGAACAGUGGUUUAGUU   1   ||-|||||*|||||=|||||||||| targets:1593   GGUGAUCCACUUGUUACCAAAUCAA   1617 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   |*|||||*|||||||||||||*|| targets:401   GUGAUCCCCUUGUCACCAAAUGAA   424 Target Full Sequence	2.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   **|||||*|||*|||||||||||| targets:1650   AUGAUCCACUUAUCACCAAAUCAA   1673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   **|||||*|||*|||||||||||| targets:1650   AUGAUCCACUUAUCACCAAAUCAA   1673 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   CCCUAGGAGAACAGUGGUUUAGUU   1   **|||||*|||*|||||||||||| targets:1758   AUGAUCCACUUAUCACCAAAUCAA   1781 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget