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BaseInfo

ncRNA ID novel_zma_miR1902
Species Zea mays
Class miRNA
Genome position Chr1:155448110-155448188 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 22
Mature sequence(if miRNA) 1 - UUAUGUGUAGAAACCUAGCCGG - 22
Stem-loop(if miRNA) --              C   CCG    ---        A U
  UUAUGUGUAGAAAC UAG   GUCU   ACAUUGAA C C
  |||||||||||||| |||   ||||   |||||||| | U
  GAUACACAUCUUUG AUU   CAGG   UGUAAUUU G A
GU              U   -CA    AUG        A U
Stem-loop sequence UUAUGUGUAGAAACCUAGCCGGUCUACAUUGAAACUCUAUGAUUUAAUGUGUAGGACACUUAUGUUUCUACACAUAGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403202.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=|||||||||||||||||
targets:68   UCUCUUAGGUUUCUACACAUAA   89

2.0 Sequence 1327 from Patent EP2074227 NA coding protein psRNATarget
JB163663.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=|||||||||||||||||
targets:68   UCUCUUAGGUUUCUACACAUAA   89

2.0 Sequence 1327 from Patent EP2559767 NA coding protein psRNATarget
LQ235332.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=|||||||||||||||||
targets:68   UCUCUUAGGUUUCUACACAUAA   89

2.0 Sequence 1327 from Patent EP2985353 NA coding protein psRNATarget
HI403209.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**|||||||||||||||||=
targets:144   UCUCCUAGGUUUCUACACAUAG   165

2.0 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
JB163670.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**|||||||||||||||||=
targets:144   UCUCCUAGGUUUCUACACAUAG   165

2.0 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
LQ235339.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**|||||||||||||||||=
targets:144   UCUCCUAGGUUUCUACACAUAG   165

2.0 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
JB170556.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:67   UCUCUUAGGUUUCUACACAUAG   88

3.0 Sequence 8220 from Patent EP2559767 NA coding protein psRNATarget
HI410095.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:67   UCUCUUAGGUUUCUACACAUAG   88

3.0 Sequence 8220 from Patent EP2074227 NA coding protein psRNATarget
LQ242225.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:67   UCUCUUAGGUUUCUACACAUAG   88

3.0 Sequence 8220 from Patent EP2985353 NA coding protein psRNATarget
HI402968.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:70   UCUCUUAGGUUUCUACACAUAG   91

3.0 Sequence 1093 from Patent EP2074227 NA coding protein psRNATarget
JB163429.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:70   UCUCUUAGGUUUCUACACAUAG   91

3.0 Sequence 1093 from Patent EP2559767 NA coding protein psRNATarget
LQ235098.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  =|**=||||||||||||||||=
targets:70   UCUCUUAGGUUUCUACACAUAG   91

3.0 Sequence 1093 from Patent EP2985353 NA coding protein psRNATarget
JB163683.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  ==**=||||||||||||||||=
targets:138   UUUCUUAGGUUUCUACACAUAG   159

3.0 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235352.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  ==**=||||||||||||||||=
targets:138   UUUCUUAGGUUUCUACACAUAG   159

3.0 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
HI403222.1
ncRNA:22   GGCCGAUCCAAAGAUGUGUAUU   1
  ==**=||||||||||||||||=
targets:138   UUUCUUAGGUUUCUACACAUAG   159

3.0 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget