Search result

BaseInfo

ncRNA ID	novel_zma_miR1899
Species	Zea mays
Class	miRNA
Genome position	Chr7:116491101-116491275 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR1997865;SRR5451003;SRR5451006;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AAGCGAUGAACAUAUGUGAGCUCA - 24
Stem-loop(if miRNA)	--AAGC      C   -U       ---------CA    U  U   U  CACCCCC  -      AGAA  G    -     GA   G  A AU       GAUGAA AUA  GUGAGCU           CCCU GC GCC CA       AC AGGAGA    CA GUGG UCGAA  GGA UC C  A       |||||| |||  |||||||           |||| || ||| ||       || ||||||    || |||| |||||  ||| || |  A       CUAUUU UAU  CACUUGA           GGGA CG CGG GU       UG UCCUCU    GU UAUC AGUUU  CUU AG G  C UAUUUA      U   UU       UUUAUAAUAAA    C  -   U  -UUCGAC  A      -GCG  G    U     AG   G  - AG
Stem-loop sequence	AAGCGAUGAACAUAUGUGAGCUCACCCUUGCUGCCUCACACCCCCACAGGAGAAGAACAGGUGGUCGAAGAGGAGUCACAUAACGAGGAGUUCGAUUUGAUCUAUGUGGCGUCUCCUAGUCAGCUUUGUGGCGCCAGGGAAAUAAUAUUUAGUUCACUUUAUUUUUAUCAUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940976.1	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   |||||||||||||||||||||||* targets:170   UGAGCUCACAUAUGUUCAUCGCUC   193 Target Full Sequence	1.0	Zea mays clone 1226050 mRNA sequence	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||=||||||||||||||||* targets:3063   UGAGCUUACAUAUGUUCAUCGCUA   3086 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
EZ056635.1	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:196   UGAGCUCACAUACGUUCAUCGCUC   219 Target Full Sequence	2.5	TSA: Zea mays contig57757, mRNA sequence	NA	coding protein	psRNATarget
BT054688.2	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:207   UGAGCUCACAUACGUUCAUCGCUC   230 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0082P04 mRNA, complete cds	NA	coding protein	psRNATarget
BT085686.2	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:207   UGAGCUCACAUACGUUCAUCGCUC   230 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175762.1	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:207   UGAGCUCACAUACGUUCAUCGCUC   230 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383091 (LOC100383091), mRNA	NA	coding protein	psRNATarget
BT066164.2	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:207   UGAGCUCACAUACGUUCAUCGCUC   230 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047C23 mRNA, complete cds	NA	coding protein	psRNATarget
EU940868.1	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:906   UGAGCUCACAUACGUUCAUCGCUC   929 Target Full Sequence	2.5	Zea mays clone 1165273 mRNA sequence	NA	coding protein	psRNATarget
XM_008680517.2	ncRNA:24   ACUCGAGUGUAUACAAGUAGCGAA   1   ||||||||||||*||||||||||* targets:8249   UGAGCUCACAUACGUUCAUCGCUC   8272 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA	NA	coding protein	psRNATarget