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BaseInfo

ncRNA ID	novel_zma_miR1895
Species	Zea mays
Class	miRNA
Genome position	Chr7:100658146-100658277 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - AGGGCAUGUUUGGUUCGUGGCUAA - 24
Stem-loop(if miRNA)	--    CA           -  G    C GC                -- GUUAGUCGUUCGAAUUGA   AGGG  UGUUUGGUUCG UG CUAA U  GCCACACUUUGCCUAA  G                  A   ||||  ||||||||||| || |||| |  ||||||||||||||||  |   UUCC  ACAAACCAAGC AC GAUU A  CGGUGUGAAACGGAUU  C                  G UA    AA           G  G    A -A                GA AAGACGGAUUCCAAUCAA
Stem-loop sequence	AGGGCAUGUUUGGUUCGUGGCUAACUGCGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAACAGUUAGGCAAAGUGUGGCAAAUUAGGCAGCGAACCAAACAAACCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163753.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||||||||||||*||||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||||||||||||*||||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||||||||||||*||||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||*||||||||||||||| targets:887   UUAGCCACAAACCAAACAUGCCCU   910 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||||||||||||*||||| targets:2491   UUAGCCACGAACCAAACAGGCCCU   2514 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||*|||||||||||||=| targets:1410   UUAGCCACAAACCAAACAUGCCUU   1433 Target Full Sequence	2.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||||||||||||*||||* targets:818   UUAGCCACGAACCAAACAGGCCCA   841 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AAUCGGUGC-UUGGUUUGUACGGGA   1   ||||*||*|-||||||||||||||| targets:15   UUAGGCAGGGAACCAAACAUGCCCU   39 Target Full Sequence	3.0	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||*|||||||||*||||| targets:995   UUAGCCACAAACCAAACAGGCCCU   1018 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||*|||||||||*||||| targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   ||||||||*|||||||||*||||| targets:2662   UUAGCCACAAACCAAACAAGCCCU   2685 Target Full Sequence	2.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
EZ072721.1	ncRNA:24   AAU--CGGUGCUUGGUUUGUACGGGA   1   ||=--|=*|||||||||||||||||| targets:20   UUGAGGUAACGAACCAAACAUGCCCU   45 Target Full Sequence	1.0	TSA: Zea mays contig08358, mRNA sequence	NA	coding protein	psRNATarget
BT069790.1	ncRNA:24   AAU--CGGUGCUUGGUUUGUACGGGA   1   ||=--||*||||||||||||||||=| targets:1353   UUGAGGCAACGAACCAAACAUGCCUU   1378 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0287K05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665828.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   **||*||||||||||||||||||* targets:112   GCAGGCACGAACCAAACAUGCCCG   135 Target Full Sequence	1.0	PREDICTED: Zea mays formin-like protein 13 (LOC103642590), mRNA	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   AAUCGGU-GCUUGGUUUGUACGGGA   1   ||||*||-|*||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	3.0	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   AAUCGGU-GCUUGGUUUGUACGGGA   1   ||||*||-|*||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	3.0	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   AAUCGGU-GCUUGGUUUGUACGGGA   1   ||||*||-|*||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	3.0	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
BT041108.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   |||--||||=|||||||||||||* targets:356   UUA--CACGGACCAAACAUGCCCG   377 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176F10 mRNA, complete cds	NA	coding protein	psRNATarget
EU964346.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   |||--||||=|||||||||||||* targets:366   UUA--CACGGACCAAACAUGCCCG   387 Target Full Sequence	2.0	Zea mays clone 278105 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150455.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   |||--||||=|||||||||||||* targets:366   UUA--CACGGACCAAACAUGCCCG   387 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276738 (LOC100276738), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   |||*||||*|||||||||*||||| targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACGGGA   1   |||*||||*|||||||||*||||| targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
BT067270.2	ncRNA:24   AAU--CGGUGCUUGGUUUGUACGGGA   1   ||=--|=*|||||||||||||||||* targets:17   UUGAGGUAACGAACCAAACAUGCCCC   42 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0366K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176105.1	ncRNA:24   AAU--CGGUGCUUGGUUUGUACGGGA   1   ||=--|=*|||||||||||||||||* targets:17   UUGAGGUAACGAACCAAACAUGCCCC   42 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383457 (LOC100383457), mRNA	NA	coding protein	psRNATarget
XM_008683326.2	ncRNA:24   AAU--CGGUGCUUGGUUUGUACGGGA   1   ||=--|=*|*|||||||||||||||| targets:2229   UUGAGGUAAAGAACCAAACAUGCCCU   2254 Target Full Sequence	2.0	PREDICTED: Zea mays DUF1336 domain containing protein expressed (LOC100274268), transcript variant X1, mRNA	NA	coding protein	psRNATarget