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BaseInfo

ncRNA ID novel_zma_miR1887
Species Zea mays
Class miRNA
Genome position Chr1:131972063-131972182 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089715
Length 22
Mature sequence(if miRNA) 1 - UGUGGCGUGCGGGAUGAAGGGC - 22
Stem-loop(if miRNA) --    -G               G  CAC     --  U - GAAUAAGUCUCCAGCUGCCGCG
  UGUG  CGUGCGGGAUGAAGG CC   GCUGG  GG A U                      C
  ||||  ||||||||||||||| ||   |||||  || | |
  ACGC  GUACGUCUUGCUUCC GG   CGUGC  AA C U                      G
UA    GA               -  --U     UA  - G CGUGCCGUGCGGGGAGGUUGUU
Stem-loop sequence UGUGGCGUGCGGGAUGAAGGGCCCACGCUGGGGUAUGAAUAAGUCUCCAGCUGCCGCGCGUUGUUGGAGGGGCGUGCCGUGCUGCAAAUCGUGCUGGCCUUCGUUCUGCAUGAGCGCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406811.1
ncRNA:22   CGGGAAGUAGGGCGUGCGGUGU   1
  *|||*||||||||||||||=||
targets:301   ACCCGUCAUCCCGCACGCCGCA   322

2.5 Sequence 4936 from Patent EP2074227 NA coding protein psRNATarget
LQ238941.1
ncRNA:22   CGGGAAGUAGGGCGUGCGGUGU   1
  *|||*||||||||||||||=||
targets:301   ACCCGUCAUCCCGCACGCCGCA   322

2.5 Sequence 4936 from Patent EP2985353 NA coding protein psRNATarget
JB167272.1
ncRNA:22   CGGGAAGUAGGGCGUGCGGUGU   1
  *|||*||||||||||||||=||
targets:301   ACCCGUCAUCCCGCACGCCGCA   322

2.5 Sequence 4936 from Patent EP2559767 NA coding protein psRNATarget