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BaseInfo

ncRNA ID novel_zma_miR1881
Species Zea mays
Class miRNA
Genome position Chr1:10943471-10943525 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - CGGGUUCGGGAUUCGGGUAUCGGG - 24
Stem-loop(if miRNA) --      C      C   U  C    U
  CGGGUU GGGAUU GGG AU GGGU U
  |||||| |||||| ||| || |||| U
  GCCCGA UCUUGA UCC UG CCCG C
UU      C      -   -  A    U
Stem-loop sequence CGGGUUCGGGAUUCGGGUAUCGGGUUUUCUGCCCAGUCCUAGUUCUCAGCCCGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085051.2
ncRNA:24   GGGCUAUGGGCUUAGGGCUUGGGC   1
  |||||||||||||*||||||||||
targets:99   CCCGAUACCCGAAACCCGAACCCG   122

1.5 Zea mays full-length cDNA clone ZM_BFb0234H18 mRNA, complete cds NA coding protein psRNATarget
XM_008645533.2
ncRNA:24   GGGCUAUGGGCUUAGGGCUUGGGC   1
  |||||||||||||*||||||||||
targets:1563   CCCGAUACCCGAAACCCGAACCCG   1586

1.5 PREDICTED: Zea mays expp1 protein (LOC100283623), transcript variant X1, mRNA NA coding protein psRNATarget