Search result

BaseInfo

ncRNA ID	novel_zma_miR1879
Species	Zea mays
Class	miRNA
Genome position	Chr3:39744841-39744892 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUGUCCGACGGCUGUCAGGGUAGC - 24
Stem-loop(if miRNA)	--   G A GA              A   UAC U G  GGCCGUCGGACAUA G   ||| | |  ||||||||||||||   AUG G C  UCGGCAGCCUGUAU C CG   G A UG              U
Stem-loop sequence	UACGUAGGAGGCCGUCGGACAUAAGCUUAUGUCCGACGGCUGUCAGGGUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548257.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2663   GC--CCCGGGCAGCCGUCGGACAU   2684 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020548255.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2676   GC--CCCGGGCAGCCGUCGGACAU   2697 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020548256.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2695   GC--CCCGGGCAGCCGUCGGACAU   2716 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673007.2	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2822   GC--CCCGGGCAGCCGUCGGACAU   2843 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548252.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2827   GC--CCCGGGCAGCCGUCGGACAU   2848 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548251.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2836   GC--CCCGGGCAGCCGUCGGACAU   2857 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548259.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2871   GC--CCCGGGCAGCCGUCGGACAU   2892 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020548258.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2905   GC--CCCGGGCAGCCGUCGGACAU   2926 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020548254.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2916   GC--CCCGGGCAGCCGUCGGACAU   2937 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020548253.1	ncRNA:24   CGAUGGGACUGUCGGCAGCCUGUA   1   ||--|||*|=|||||||||||||| targets:2930   GC--CCCGGGCAGCCGUCGGACAU   2951 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103648558 (LOC103648558), transcript variant X4, mRNA	NA	coding protein	psRNATarget