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BaseInfo

ncRNA ID novel_zma_miR1877
Species Zea mays
Class miRNA
Genome position Chr7:95258819-95258925 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - UUCAUCGGACUGUCCAGUGUGCAC - 24
Stem-loop(if miRNA) --    - -     CU        --CCCA  C G  -     GAU   CUUGCUGCU
  GCAC C GGACA  GUCCGAUG      GG U GC GCGUC   GAG         C
  |||| | |||||  ||||||||      || | || |||||   |||
  CGUG G CCUGU  CAGGCUAC      UC A CG CGCAG   GUU         U
CA    U A     --        UUAAAA  - G  U     -GG   GCUAAGGAC
Stem-loop sequence GCACCGGACACUGUCCGAUGCCCAGGCUGGCGCGUCGAUGAGCUUGCUGCUCUCAGGAAUCGUUGGGGACGCUGCGACUAAAAUUCAUCGGACUGUCCAGUGUGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT068112.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:602   GUGCACACCGGACAGUCCGGUGAA   625

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:738   GUGCACACCGGACAGUCCGGUGAA   761

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:738   GUGCACACCGGACAGUCCGGUGAA   761

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:716   GUGCACACCGGACAGUCCGGUGAA   739

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:716   GUGCACACCGGACAGUCCGGUGAA   739

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:699   GUGCACACCGGACAGUCCGGUGAA   722

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:699   GUGCACACCGGACAGUCCGGUGAA   722

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:563   GUGCACACCGGACAGUCCGGUGAA   586

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:563   GUGCACACCGGACAGUCCGGUGAA   586

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:411   GUGCACACCGGACAGUCCGGUGAA   434

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  ||||||||*||||||||||=||||
targets:4611   GUGCACACCGGACAGUCCGGUGAA   4634

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
HI409410.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  **||||||*||||||||||=||||
targets:13   UGGCACACCGGACAGUCCGGUGAA   36

2.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  **||||||*||||||||||=||||
targets:13   UGGCACACCGGACAGUCCGGUGAA   36

2.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
JB169871.1
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  **||||||*||||||||||=||||
targets:13   UGGCACACCGGACAGUCCGGUGAA   36

2.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
BT083610.2
ncRNA:24   CACGUGUGACCUGUCAGGCUACUU   1
  **||||||*||||||||||=||||
targets:698   UGGCACACCGGACAGUCCGGUGAA   721

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
U41079.1
ncRNA:24   CAC-GUGUGACCUGUCAGGCUACUU   1
  |||-|*|||*||||||||||=||||
targets:26   GUGACUCACCGGACAGUCCGGUGAA   50

2.5 Zea mays copia-type retroelement PREM-2, partial sequence NA coding protein psRNATarget
LQ242120.1
ncRNA:24   CAC-GUGUGACCUGUCAGGCUACUU   1
  |||-==|||*|||||||||*|||||
targets:33   GUGGUGCACCGGACAGUCCAAUGAA   57

2.5 Sequence 8115 from Patent EP2985353 NA coding protein psRNATarget
JB170451.1
ncRNA:24   CAC-GUGUGACCUGUCAGGCUACUU   1
  |||-==|||*|||||||||*|||||
targets:33   GUGGUGCACCGGACAGUCCAAUGAA   57

2.5 Sequence 8115 from Patent EP2559767 NA coding protein psRNATarget
HI409990.1
ncRNA:24   CAC-GUGUGACCUGUCAGGCUACUU   1
  |||-==|||*|||||||||*|||||
targets:33   GUGGUGCACCGGACAGUCCAAUGAA   57

2.5 Sequence 8115 from Patent EP2074227 NA coding protein psRNATarget
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