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BaseInfo

ncRNA ID novel_zma_miR1871
Species Zea mays
Class miRNA
Genome position Chr7:122601735-122601891 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089700;SRR2089701
Length 21
Mature sequence(if miRNA) 1 - UGAGGUGAUUGAGGACAUCAU - 21
Stem-loop(if miRNA) --       A         --           C     A     A  -   A    G         A          AAC
  GAUGUCC CAAUCACCU  AAAAAUAUGAA UUGAA UUCAA UU UAC UGGA AAACGAAAA GACAAAUCUU   A
  ||||||| |||||||||  ||||||||||| ||||| ||||| || ||| |||| ||||||||| ||||||||||
  CUACAGG GUUAGUGGA  UUUUUAUACUU AACUU AAGUU AA AUG ACCU UUUGUUUUU CUGUUUAGAG   G
UA       A         GU           C     A     A  C   C    G         C          GGA
Stem-loop sequence GAUGUCCACAAUCACCUAAAAAUAUGAACUUGAAAUUCAAAUUUACAUGGAGAAACGAAAAAGACAAAUCUUAACAGAGGGAGAUUUGUCCUUUUUGUUUGUCCACGUACAAAUUGAAAUUCAACUUCAUAUUUUUUGAGGUGAUUGAGGACAUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542332.1
ncRNA:21   UACUACAGGAGUUAGUGGAGU   1
  *****||||||||||||||||
targets:100   CACCAGUCCUCAAUCACCUCA   120

3.0 PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008657214.2
ncRNA:21   UACUACAGGAGUUAGUGGAGU   1
  *****||||||||||||||||
targets:101   CACCAGUCCUCAAUCACCUCA   121

3.0 PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008657213.2
ncRNA:21   UACUACAGGAGUUAGUGGAGU   1
  *****||||||||||||||||
targets:101   CACCAGUCCUCAAUCACCUCA   121

3.0 PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657212.2
ncRNA:21   UACUACAGGAGUUAGUGGAGU   1
  *****||||||||||||||||
targets:101   CACCAGUCCUCAAUCACCUCA   121

3.0 PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X1, mRNA NA coding protein psRNATarget
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