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BaseInfo

ncRNA ID novel_zma_miR1862
Species Zea mays
Class miRNA
Genome position Chr7:172767231-172767312 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089714;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089700;SRR2089701;SRR2089708
Length 24
Mature sequence(if miRNA) 59 - GUGGAUUGAGUGGUAUUGAGUCGG - 82
Stem-loop(if miRNA) --        -    G     ---A  C   UUAAAUCCA   C
  GUGGAUUG AGUG UAUUG    GU GGU         UAG A
  |||||||| |||| |||||    || |||         |||
  UACCUAAC UCAC AUAAC    CA CCA         AUU A
UA        C    -     CUUA  A   -UACUUAAA   G
Stem-loop sequence GUGGAUUGAGUGGUAUUGAGUCGGUUUAAAUCCAUAGCAAGUUAAAAUUCAUACCAACAUUCCAAUACACUCCAAUCCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT054344.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||||||||||||||=|||||||||
targets:1127   CCGACUCAAUACCAUUCAAUCCAC   1150

1.5 Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds NA coding protein psRNATarget
NM_001152495.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||||||||||||||=|||||||||
targets:1127   CCGACUCAAUACCAUUCAAUCCAC   1150

1.5 Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA NA coding protein psRNATarget
EZ069047.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |||||||||||*||||||||||||
targets:23   CCGACUCAAUAACACUCAAUCCAC   46

1.5 TSA: Zea mays contig04682, mRNA sequence NA coding protein psRNATarget
NM_001152975.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |||||||||||*||||||||||||
targets:957   CCGACUCAAUAACACUCAAUCCAC   980

1.5 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
BT055408.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |||||||||||*||||||||||||
targets:957   CCGACUCAAUAACACUCAAUCCAC   980

1.5 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
XM_008649521.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |||||||||||*||||||||||||
targets:1009   CCGACUCAAUAACACUCAAUCCAC   1032

1.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |||||||||||*||||||||||||
targets:1038   CCGACUCAAUAACACUCAAUCCAC   1061

1.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  =|||||||||*|||||||||||||
targets:4055   UCGACUCAAUCCCACUCAAUCCAC   4078

1.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
BT066125.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  =|*|||=|||||||||||||||||
targets:1070   UCAACUUAAUACCACUCAAUCCAC   1093

1.0 Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds NA coding protein psRNATarget
BT042439.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  =|*|||=|||||||||||||||||
targets:961   UCAACUUAAUACCACUCAAUCCAC   984

1.0 Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds NA coding protein psRNATarget
EU952677.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  =|*|||=|||||||||||||||||
targets:983   UCAACUUAAUACCACUCAAUCCAC   1006

1.0 Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
LQ235150.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
HI403020.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
JB163481.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
EU942673.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112

1.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
BT041052.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|||||||*=||||||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|||||||*=||||||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=|||||*|||||||||||||
targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436

1.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
AY106055.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ==*|||=||||||||*||||||||
targets:979   UUAACUUAAUACCACCCAAUCCAC   1002

2.5 Zea mays PCO115884 mRNA sequence NA coding protein psRNATarget
NM_001159099.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ==*|||=||||||||*||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.5 Zea mays mitochondrial glycoprotein (LOC100286211), mRNA NA coding protein psRNATarget
EU976164.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ==*|||=||||||||*||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.5 Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EZ082720.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  **|==|=|||*|||||||||||||
targets:66   AGGGUUUAAUCCCACUCAAUCCAC   89

2.0 TSA: Zea mays contig18363, mRNA sequence NA coding protein psRNATarget
BT066485.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  **|==|=|||*|||||||||||||
targets:70   AGGGUUUAAUCCCACUCAAUCCAC   93

2.0 Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds NA coding protein psRNATarget
JB166350.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405889.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
JB163555.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
JB163551.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
HI403094.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
EZ064093.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*||*||||*||||||||||||=
targets:186   CCCACCCAAUCCCACUCAAUCCAU   209

3.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
EU951448.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:743   CCCAUCCAAUCCCACUCAAUCCAC   766

2.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:872   CCCAUCCAAUCCCACUCAAUCCAC   895

2.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:174   CCCAUCCAAUCCCACUCAAUCCAC   197

2.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:526   CCCAUCCAAUCCCACUCAAUCCAC   549

2.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

2.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

2.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
EU955633.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

2.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

2.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:2498   CCCAUCCAAUCCCACUCAAUCCAC   2521

2.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

2.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

2.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1079   CCCAUCCAAUCCCACUCAAUCCAC   1102

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1227   CCCAUCCAAUCCCACUCAAUCCAC   1250

2.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:5802   CCCAUCCAAUCCCACUCAAUCCAC   5825

2.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
JB169468.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*||*||||*||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

3.0 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
HI409007.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*||*||||*||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

3.0 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*||*||||*||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

3.0 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=*||||*|||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=*||||*|||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=*||||*|||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

3.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

3.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

3.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
EZ064016.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=*||||*|||||||||||||
targets:118   CUCAUCCAAUCCCACUCAAUCCAC   141

2.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*||||||||||||=
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

3.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  ||*|=*||||*||||||||||||=
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

3.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   GGCUGAGUUAUGGUGAGUUAGGUG   1
  |=*|=*||||*|||||||||||||
targets:2209   CUCAUCCAAUCCCACUCAAUCCAC   2232

2.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget