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BaseInfo

ncRNA ID	novel_zma_miR1856
Species	Zea mays
Class	miRNA
Genome position	Chr7:179755026-179755144 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	23
Mature sequence(if miRNA)	1 - UGUUUGGGAUCAAGGGUAAUGGA - 23
Stem-loop(if miRNA)	--U        U    -  U       U    --    GGGC      AUC     U    A    GUUUGGGA CAAG GG AAUGGAG GGGU  GAAG    UAGAAU   UCAUU UUUA U    |||||||| |||| || ||||||| ||||  ||||    ||||||   ||||| ||||    CAAACCCU GUUC CC UUAUUUC CCUA  CUUC    AUCUUA   AGUGA AAAU U GUU        C    A  -       U    AC    -AUA      GGA     U    U
Stem-loop sequence	UGUUUGGGAUCAAGGGUAAUGGAGUGGGUGAAGGGGCUAGAAUAUCUCAUUUUUUAAUUUUAAAUAGUGAAGGAUUCUAAUACUUCCAAUCCUCUUUAUUCCACUUGCUCCCAAACUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040266.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:954   UCC-UUACCCUUGAUCCAAAACC   975 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0074H16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254779.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:954   UCC-UUACCCUUGAUCCAAAACC   975 Target Full Sequence	2.5	Zea mays glutamine synthetase 1 (LOC100856886), mRNA	NA	coding protein	psRNATarget
XM_008664108.2	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:1127   UCC-UUACCCUUGAUCCAAAACC   1148 Target Full Sequence	2.5	PREDICTED: Zea mays glutamine synthetase 1 (gln1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT041728.2	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:1057   UCC-UUACCCUUGAUCCAAAACC   1078 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0040G02 mRNA, complete cds	NA	coding protein	psRNATarget
EU959610.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:998   UCC-UUACCCUUGAUCCAAAACC   1019 Target Full Sequence	2.5	Zea mays clone 218852 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT063072.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:955   UCC-UUACCCUUGAUCCAAAACC   976 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0022D15 mRNA, complete cds	NA	coding protein	psRNATarget
BT038462.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:950   UCC-UUACCCUUGAUCCAAAACC   971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274H14 mRNA, complete cds	NA	coding protein	psRNATarget
EU963258.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:894   UCC-UUACCCUUGAUCCAAAACC   915 Target Full Sequence	2.5	Zea mays clone 259899 glutamine synthetase mRNA, complete cds	NA	coding protein	psRNATarget
AY110796.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:892   UCC-UUACCCUUGAUCCAAAACC   913 Target Full Sequence	2.5	Zea mays CL2183_1 mRNA sequence	NA	coding protein	psRNATarget
NM_001112255.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:892   UCC-UUACCCUUGAUCCAAAACC   913 Target Full Sequence	2.5	Zea mays glutamine synthetase 1 (gln1), mRNA	NA	coding protein	psRNATarget
X65931.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:892   UCC-UUACCCUUGAUCCAAAACC   913 Target Full Sequence	2.5	Z.mays mRNA gs2 for glutamine synthatase	NA	coding protein	psRNATarget
EZ105152.1	ncRNA:23   AGGUAAUGGGAACUAGGGUUUGU   1   |||-|||||||||||||*||||* targets:111   UCC-UUACCCUUGAUCCAAAACC   132 Target Full Sequence	2.5	TSA: Zea mays contig40809, mRNA sequence	NA	coding protein	psRNATarget