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BaseInfo

ncRNA ID novel_zma_miR1855
Species Zea mays
Class miRNA
Genome position Chr7:168425281-168425373 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089713;SRR2089715;SRR5451004;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - ACCUAUGGAUUGGAUGAGAUUGGA - 24
Stem-loop(if miRNA) --A  -         GA          -------          -   GAG
   CC UAUGGAUUG  UGAGAUUGGA       AAAUUUUAAU AAG   U
   || |||||||||  ||||||||||       |||||||||| |||
   GG AUACCUAAC  ACUCUAAUCU       UUUAGGGUUG UUC   U
UUA  U         UC          AUCCAAA          A   AGU
Stem-loop sequence ACCUAUGGAUUGGAUGAGAUUGGAAAAUUUUAAUAAGGAGUUUGACUUAGUUGGGAUUUAAACCUAUCUAAUCUCACUCAAUCCAUAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066004.2
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:46   UCCAAUCUCAUCCAAUCCAUGGGU   69

1.5 Zea mays full-length cDNA clone ZM_BFb0144M24 mRNA, complete cds NA coding protein psRNATarget
XM_020543935.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543938.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
EZ113717.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||||||
targets:50   UCCAAUCCCAUCCAAUCCAUAGGU   73

1.0 TSA: Zea mays contig49378, mRNA sequence NA coding protein psRNATarget
EZ070047.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:33   UCCAAUCUCAUCCAAUCCAUAUGU   56

1.5 TSA: Zea mays contig05683, mRNA sequence NA coding protein psRNATarget
HI405840.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
LQ237970.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
JB166301.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
XM_008667530.2
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |=|||||||||||||||||||*||
targets:2816   UUCAAUCUCAUCCAAUCCAUAUGU   2839

1.5 PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:1012   UCUAAUCUCAUCCAAUCCAUAUGU   1035

1.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT068211.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792

1.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792

1.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EU946263.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |=|||||||||||||||||||*||
targets:596   UUCAAUCUCAUCCAAUCCAUAUGU   619

1.5 Zea mays clone 302506 mRNA sequence NA coding protein psRNATarget
HI405832.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
JB166293.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
LQ237962.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  ||=||||||||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

1.5 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
JB163754.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

2.5 Sequence 1418 from Patent EP2559767 NA coding protein psRNATarget
LQ235423.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

2.5 Sequence 1418 from Patent EP2985353 NA coding protein psRNATarget
HI403293.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

2.5 Sequence 1418 from Patent EP2074227 NA coding protein psRNATarget
HI405925.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

2.5 Sequence 4050 from Patent EP2074227 NA coding protein psRNATarget
JB166386.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

2.5 Sequence 4050 from Patent EP2559767 NA coding protein psRNATarget
LQ238055.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

2.5 Sequence 4050 from Patent EP2985353 NA coding protein psRNATarget
JB170621.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

2.0 Sequence 8285 from Patent EP2559767 NA coding protein psRNATarget
LQ242290.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

2.0 Sequence 8285 from Patent EP2985353 NA coding protein psRNATarget
HI410160.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

2.0 Sequence 8285 from Patent EP2074227 NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:4248   UCCAAUCCCAUCCAAUCCAUAUGU   4271

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:4152   UCCAAUCCCAUCCAAUCCAUAUGU   4175

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3828   UCCAAUCCCAUCCAAUCCAUAUGU   3851

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3753   UCCAAUCCCAUCCAAUCCAUAUGU   3776

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3766   UCCAAUCCCAUCCAAUCCAUAUGU   3789

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3758   UCCAAUCCCAUCCAAUCCAUAUGU   3781

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3764   UCCAAUCCCAUCCAAUCCAUAUGU   3787

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3710   UCCAAUCCCAUCCAAUCCAUAUGU   3733

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:3686   UCCAAUCCCAUCCAAUCCAUAUGU   3709

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:2105   UCCAAUCACAUCCAAUCCAUAUGU   2128

2.5 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
HI405823.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
JB166284.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
LQ237953.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*|||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
AY105812.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |==||||||||||||||||||*|*
targets:1037   UUUAAUCUCAUCCAAUCCAUAUGA   1060

2.5 Zea mays PCO140232 mRNA sequence NA coding protein psRNATarget
BT040208.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |||||||*=|*|||||||||||||
targets:1367   UCCAAUCCUACCCAAUCCAUAGGU   1390

3.0 Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds NA coding protein psRNATarget
JB166283.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |=|||||*|||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
LQ237952.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |=|||||*|||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
HI405822.1
ncRNA:24   AGGUUAGAGUAGGUUAGGUAUCCA   1
  |=|||||*|||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

2.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
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