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BaseInfo

ncRNA ID	novel_zma_miR1854
Species	Zea mays
Class	miRNA
Genome position	Chr10:115042393-115042476 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089700;SRR2089701;SRR2089704;SRR2089705
Length	21
Mature sequence(if miRNA)	1 - CAGAGGGGGAUUGAAGGGGAU - 21
Stem-loop(if miRNA)	--                   A           C       A   CAGAGGGGGAUUGAAGGGG UUAAAUCCCCU CUAGUCA A   ||||||||||||||||||| ||||||||||| |||||||   GUCUCCCCCUAACUUCCCC AAUUUAGGGGA GAUCAGU A AG                   A           A       A
Stem-loop sequence	CAGAGGGGGAUUGAAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGAAGGGGAUUUAAACCCCUUCAAUCCCCCUCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049235.1	ncRNA:20   AGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||=|||| targets:1   UCCCCUUCAAUCCCCUUCUG   20 Target Full Sequence	1.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
HI406037.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:93   AUCCCCUUCAAUCCCCCUCAA   113 Target Full Sequence	2.5	Sequence 4162 from Patent EP2074227	NA	coding protein	psRNATarget
JB166498.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:93   AUCCCCUUCAAUCCCCCUCAA   113 Target Full Sequence	2.5	Sequence 4162 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238167.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:93   AUCCCCUUCAAUCCCCCUCAA   113 Target Full Sequence	2.5	Sequence 4162 from Patent EP2985353	NA	coding protein	psRNATarget
EU960473.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:100   AUCCCCUUCAAUCCCCCUCAA   120 Target Full Sequence	2.5	Zea mays clone 225209 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963775.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:233   AUCCCCUUCAAUCCCCCUCAA   253 Target Full Sequence	2.5	Zea mays clone 272562 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942334.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:241   AUCCCCUUCAAUCCCCCUCAA   261 Target Full Sequence	2.5	Zea mays clone 1480331 mRNA sequence	NA	coding protein	psRNATarget
EU961196.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:375   AUCCCCUUCAAUCCCCCUCAA   395 Target Full Sequence	2.5	Zea mays clone 233383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001245881.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:759   AUCCCCUUCAAUCCCCCUCAA   779 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
EU964415.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:759   AUCCCCUUCAAUCCCCCUCAA   779 Target Full Sequence	2.5	Zea mays clone 278711 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069598.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:854   AUCCCCUUCAAUCCCCCUCAA   874 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds	NA	coding protein	psRNATarget
BT069064.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:822   AUCCCCUUCAAUCCCCCUCAA   842 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065224.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:805   AUCCCCUUCAAUCCCCCUCAA   825 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds	NA	coding protein	psRNATarget
BT062705.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:860   AUCCCCUUCAAUCCCCCUCAA   880 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150473.2	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:860   AUCCCCUUCAAUCCCCCUCAA   880 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
XM_008678753.2	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:905   AUCCCCUUCAAUCCCCCUCAA   925 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964521.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |||||||||||||||||||** targets:921   AUCCCCUUCAAUCCCCCUCAA   941 Target Full Sequence	2.5	Zea mays clone 279503 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |*|||||*||||||||||||| targets:1603   AACCCCUCCAAUCCCCCUCUG   1623 Target Full Sequence	1.0	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   UAGGGGAAGUUAGGGGGAGAC   1   |*|||||||||||||||||** targets:842   AACCCCUUCAAUCCCCCUCAA   862 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget