| ncRNA ID | osa-miR5502 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:28979936-28980077 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 11 - UACGGAUACGGAUACGCGAUAC - 32 |
| Stem-loop(if miRNA) |
A AUGGU C - --U UU -- U A AA GCUCGUGCCCAGGUCCCAGCCUCA GG CUGUG CGCG GUCC UCUGUGUC GGC U G AC GG A || ||||| |||| |||| |||||||| ||| | | || || CC GGCAU GCGC UAGG AGGCAUAG CGC A G CC CC A G AUUGU A A CAU -U AU - - -- AUUGCGUCCGGGGCUGGGCGCGGC |
| Stem-loop sequence | AGGAUGGUCUGUGCCGCGGUCCUUCUGUGUCUUGGCUUGAACAAGGGCUCGUGCCCAGGUCCCAGCCUCAAACGGCGCGGGUCGGGGCCUGCGUUACCCCGAUACGCUGAUACGGAUACGGAUACGCGAUACGGUGUUACCG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK288581.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090049H15, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK065415.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013023C05, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |