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BaseInfo

ncRNA ID	novel_zma_miR1840
Species	Zea mays
Class	miRNA
Genome position	Chr6:100373592-100373670 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715
Length	22
Mature sequence(if miRNA)	1 - GUAUGUGUAGAAACCUAGCCGG - 22
Stem-loop(if miRNA)	--G                 C  GU      -     - U    UAUGUGUAGAAACCUAG CG  CUACAU UGAAA C C    ||||||||||||||||| ||  |||||| ||||| | U    AUACACAUCUUUGGAUU GC  GAUGUG ACUUU G A GUA                 C  UG      U     A U
Stem-loop sequence	GUAUGUGUAGAAACCUAGCCGGUCUACAUUGAAACUCUAUGAUUUCAUGUGUAGGUCGCUUAGGUUUCUACACAUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**|||||||||||||||||* targets:144   UCUCCUAGGUUUCUACACAUAG   165 Target Full Sequence	2.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**|||||||||||||||||* targets:144   UCUCCUAGGUUUCUACACAUAG   165 Target Full Sequence	2.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**|||||||||||||||||* targets:144   UCUCCUAGGUUUCUACACAUAG   165 Target Full Sequence	2.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
HI410095.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:67   UCUCUUAGGUUUCUACACAUAG   88 Target Full Sequence	3.0	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
JB170556.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:67   UCUCUUAGGUUUCUACACAUAG   88 Target Full Sequence	3.0	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:67   UCUCUUAGGUUUCUACACAUAG   88 Target Full Sequence	3.0	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
JB163663.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:68   UCUCUUAGGUUUCUACACAUAA   89 Target Full Sequence	3.0	Sequence 1327 from Patent EP2559767	NA	coding protein	psRNATarget
HI403202.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:68   UCUCUUAGGUUUCUACACAUAA   89 Target Full Sequence	3.0	Sequence 1327 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235332.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:68   UCUCUUAGGUUUCUACACAUAA   89 Target Full Sequence	3.0	Sequence 1327 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:70   UCUCUUAGGUUUCUACACAUAG   91 Target Full Sequence	3.0	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
JB163429.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:70   UCUCUUAGGUUUCUACACAUAG   91 Target Full Sequence	3.0	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
HI402968.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   =|**=||||||||||||||||* targets:70   UCUCUUAGGUUUCUACACAUAG   91 Target Full Sequence	3.0	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   ==**=||||||||||||||||* targets:138   UUUCUUAGGUUUCUACACAUAG   159 Target Full Sequence	3.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   ==**=||||||||||||||||* targets:138   UUUCUUAGGUUUCUACACAUAG   159 Target Full Sequence	3.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   ==**=||||||||||||||||* targets:138   UUUCUUAGGUUUCUACACAUAG   159 Target Full Sequence	3.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
EU964540.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   *|**||||*||||||||||||= targets:1094   ACAUCUAGCUUUCUACACAUAU   1115 Target Full Sequence	3.0	Zea mays clone 279735 AT hook motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254835.1	ncRNA:22   GGCCGAUCCAAAGAUGUGUAUG   1   *|**||||*||||||||||||= targets:1094   ACAUCUAGCUUUCUACACAUAU   1115 Target Full Sequence	3.0	Zea mays AT hook motif family protein (LOC100856949), mRNA	NA	coding protein	psRNATarget