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BaseInfo

ncRNA ID	osa-miR5152-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:28910038-28910253 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - AGACCAUGCCUAUACCUACCA - 33
Stem-loop(if miRNA)	---------UAAA      G         A   CUU    -  C       U         C    C  C     GA   UUAAA      ----             AAACUUCC              GGUAGG AUAGGCAUG UCU   UCUC AC AAAUUUC AAGACCAAA UCAA UU GUUUG  AAG     AUAAGA    CAAAUUUUGCAUG        C              |||||| ||||||||| |||   |||| || ||||||| ||||||||| |||| || |||||  |||     ||||||    |||||||||||||        U              CCAUCC UAUCCGUAC AGA   AGAG UG UUUAAAG UUCUGGUUU AGUU AA CGAAC  UUC     UGUUCU    GUUUGAAACGUGC        A GUAUUUAUAAUCA      A         C   UAU    G  U       -         A    U  A     -G   ---UA      UUAU             CUAUCACU
Stem-loop sequence	UAAAGGUAGGGAUAGGCAUGAUCUCUUUCUCACCAAAUUUCUAAGACCAAACUCAACUUCGUUUGGAAAGUUAAAAUAAGACAAAUUUUGCAUGAAACUUCCCUAUCACUAUCCGUGCAAAGUUUGUAUUUCUUGUAUCUUGCAAGCAAAUUUGAAUUUGGUCUUGAAAUUUUGUGGAGAUAUAGACCAUGCCUAUACCUACCACUAAUAUUUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062968.1	ncRNA:21   ACCAUCCAUAUCCGUACCAGA   1   *||||||*|||||||||*||| targets:465   AGGUAGGGAUAGGCAUGAUCU   485 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-109-E01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).
2	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).