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BaseInfo

ncRNA ID novel_zma_miR1837
Species Zea mays
Class miRNA
Genome position Chr10:109972761-109972819 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 36 - UGAGUGAGAUUGGAUGGGUUUAAA - 59
Stem-loop(if miRNA) --  GG  UG       AG U        A
  UA  UU  UUCGGUU  C CUCAAUCC U
  ||  ||  |||||||  | ||||||||
  AU  GG  AGGUUAG  G GAGUUAGG G
AA  UU  GU       -A U        U
Stem-loop sequence UAGGUUUGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGAGAUUGGAUGGGUUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549703.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2340   UUUAAACCCAUCCAAUCUCACUCA   2363

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2280   UUUAAACCCAUCCAAUCUCACUCA   2303

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2273   UUUAAACCCAUCCAAUCUCACUCA   2296

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2145   UUUAAACCCAUCCAAUCUCACUCA   2168

0.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2144   UUUAAACCCAUCCAAUCUCACUCA   2167

0.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:2072   UUUAAACCCAUCCAAUCUCACUCA   2095

0.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||||||||||||||||
targets:447   UUUAAACCCAUCCAAUCUCACUCA   470

0.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
HI403043.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||=||||||||||||=|||
targets:90   UUUAAACUCAUCCAAUCUCAUUCA   113

2.5 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
LQ235173.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||=||||||||||||=|||
targets:90   UUUAAACUCAUCCAAUCUCAUUCA   113

2.5 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
JB163504.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||=||||||||||||=|||
targets:90   UUUAAACUCAUCCAAUCUCAUUCA   113

2.5 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||||||||||||||||*||
targets:1208   UUUAAACCCAUCCAAUCUCACCCA   1231

1.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||||||||||||||||*||
targets:1208   UUUAAACCCAUCCAAUCUCACCCA   1231

1.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||||||||||||||||*||
targets:1046   UUUAAACCCAUCCAAUCUCACCCA   1069

1.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  |||||||||||||||||||||*||
targets:1013   UUUAAACCCAUCCAAUCUCACCCA   1036

1.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
JB166354.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||||||||||||||||||
targets:71   UUCAAACCCAUCCAAUCUCACUCA   94

0.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||||||||||||||||||
targets:71   UUCAAACCCAUCCAAUCUCACUCA   94

0.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||||||||||||||||||
targets:71   UUCAAACCCAUCCAAUCUCACUCA   94

0.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
BT062183.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||||||||||||||
targets:238   UUCAAACUCAUCCAAUCUCACUCA   261

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
JB166338.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||||||||||||||
targets:79   UUCAAACUCAUCCAAUCUCACUCA   102

1.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||||||||||||||
targets:79   UUCAAACUCAUCCAAUCUCACUCA   102

1.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||||||||||||||
targets:79   UUCAAACUCAUCCAAUCUCACUCA   102

1.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||||||||||||||
targets:8   UUCAAACUCAUCCAAUCUCACUCA   31

1.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||=|||||||||||
targets:3430   UUCAAACUCAUCUAAUCUCACUCA   3453

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||=|||||||||||
targets:3399   UUCAAACUCAUCUAAUCUCACUCA   3422

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||=|||||||||||
targets:3386   UUCAAACUCAUCUAAUCUCACUCA   3409

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
AY112141.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=||||=|||||||||||
targets:220   UUCAAACUCAUCUAAUCUCACUCA   243

2.5 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:1190   UUUCAAACCCAUCCAAUCCCACUCA   1214

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:1190   UUUCAAACCCAUCCAAUCCCACUCA   1214

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:1072   UUUCAAACCCAUCCAAUCCCACUCA   1096

1.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT069115.2
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:519   UUUCAAACCCAUCCAAUCCCACUCA   543

1.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
EU951448.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:736   UUUCAAACCCAUCCAAUCCCACUCA   760

1.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:80   UUUCAAACCCAUCCAAUCCCACUCA   104

1.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:80   UUUCAAACCCAUCCAAUCCCACUCA   104

1.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AAA-UUUGGGUAGGUUAGAGUGAGU   1
  |||-||||||||||||||*||||||
targets:80   UUUCAAACCCAUCCAAUCCCACUCA   104

1.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:5796   UUCAAACCCAUCCAAUCCCACUCA   5819

1.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1221   UUCAAACCCAUCCAAUCCCACUCA   1244

1.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1950   UUCAAACCCAUCCAAUCCCACUCA   1973

1.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1950   UUCAAACCCAUCCAAUCCCACUCA   1973

1.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:2492   UUCAAACCCAUCCAAUCCCACUCA   2515

1.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1807   UUCAAACCCAUCCAAUCCCACUCA   1830

1.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1807   UUCAAACCCAUCCAAUCCCACUCA   1830

1.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1522   UUCAAACCCAUCCAAUCCCACUCA   1545

1.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1522   UUCAAACCCAUCCAAUCCCACUCA   1545

1.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1458   UUCAAACCCAUCCAAUCCCACUCA   1481

1.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:1458   UUCAAACCCAUCCAAUCCCACUCA   1481

1.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:168   UUCAAACCCAUCCAAUCCCACUCA   191

1.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:866   UUCAAACCCAUCCAAUCCCACUCA   889

1.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EZ064093.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||||||||||*||||||*||||||
targets:180   UUUAAACCCACCCAAUCCCACUCA   203

2.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCA   113

1.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCA   94

1.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCA   94

1.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||||||||||||*||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCA   94

1.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=|||||||||*||||||
targets:2203   UUCAAACUCAUCCAAUCCCACUCA   2226

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=|||||||||*||||||
targets:112   UUCAAACUCAUCCAAUCCCACUCA   135

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||*=|||||||||||||||
targets:83   UUCAAACAUAUCCAAUCUCACUCA   106

2.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||*=|||||||||||||||
targets:83   UUCAAACAUAUCCAAUCUCACUCA   106

2.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||*=|||||||||||||||
targets:83   UUCAAACAUAUCCAAUCUCACUCA   106

2.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=|||||||||*||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCA   95

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=|||||||||*||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCA   95

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||=|||||||||*||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCA   95

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI406849.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||=|||*|||||||||||
targets:71   UUCAAACCUAUCAAAUCUCACUCA   94

2.5 Sequence 4974 from Patent EP2074227 NA coding protein psRNATarget
JB167310.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||=|||*|||||||||||
targets:71   UUCAAACCUAUCAAAUCUCACUCA   94

2.5 Sequence 4974 from Patent EP2559767 NA coding protein psRNATarget
LQ238979.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||=|||*|||||||||||
targets:71   UUCAAACCUAUCAAAUCUCACUCA   94

2.5 Sequence 4974 from Patent EP2985353 NA coding protein psRNATarget
BT069961.2
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*||||*|||||||||*||||||
targets:102   UUCAAACACAUCCAAUCCCACUCA   125

2.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||*||||||||*||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCA   113

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||*||||||||*||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCA   113

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AAAUUUGGGUAGGUUAGAGUGAGU   1
  ||*|||||*||||||||*||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCA   113

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
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