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BaseInfo

ncRNA ID novel_zma_miR1836
Species Zea mays
Class miRNA
Genome position Chr6:85803747-85803829 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089713;SRR2089714;SRR4237221;SRR5105959;SRR2089701;SRR2089706
Length 21
Mature sequence(if miRNA) 1 - UUGGAGGGGAUUGAAGAGGAU - 21
Stem-loop(if miRNA) -UUG             AG A       C CUG   U   A
    GAGGGGAUUGAAG  G UUAAAUC C   CUA UCA A
    |||||||||||||  | ||||||| |   ||| |||
    CUCCCCUAAUUUC  C AAUUUAG G   GAU AGU U
CUAA             CU A       A AAA   C   A
Stem-loop sequence UUGGAGGGGAUUGAAGAGGAUUAAAUCCCCUGCUAUUCAAAUAUGACUAGAAAGAGAUUUAAACUCCUUUAAUCCCCUCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU947292.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||||||||||||=|||||||
targets:373   CUCCUCUUCAAUCUCCUCCAA   393

1.5 Zea mays clone 337490 mRNA sequence NA coding protein psRNATarget
XM_020544537.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||||||||||||=|||||||
targets:668   UUCCUCUUCAAUCUCCUCCAA   688

1.5 PREDICTED: Zea mays uncharacterized LOC103644203 (LOC103644203), mRNA NA coding protein psRNATarget
JB163816.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||=|||*||||||||||||||
targets:29   AUUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI403355.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||=|||*||||||||||||||
targets:29   AUUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||=|||*||||||||||||||
targets:29   AUUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
EZ083462.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  |||||||*|||||||=|||||
targets:22   AUCCUCUCCAAUCCCUUCCAA   42

2.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
AY111588.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  |||||||*|||||||=|||||
targets:304   AUCCUCUCCAAUCCCUUCCAA   324

2.5 Zea mays CL28155_-2 mRNA sequence NA coding protein psRNATarget
BT088155.1
ncRNA:21   UAGGAGA-AGUUAGGGGAGGUU   1
  *|=||||-||||||||||||||
targets:1461   UUUCUCUCUCAAUCCCCUCCAA   1482

3.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EU947467.1
ncRNA:21   UAGGAGAAGUUAGGGGAGG-UU   1
  |*|||||||||||||||||-||
targets:1299   AACCUCUUCAAUCCCCUCCUAA   1320

3.0 Zea mays clone 343885 mRNA sequence NA coding protein psRNATarget
NM_001323405.1
ncRNA:21   UAGGAGAAGUUAGGGGAGG-UU   1
  |*|||||||||||||||||-||
targets:2002   AACCUCUUCAAUCCCCUCCUAA   2023

3.0 Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA NA coding protein psRNATarget
EZ069159.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||||||*|||||||||=|||
targets:57   UUCCUCUCCAAUCCCCUUCAA   77

2.5 TSA: Zea mays contig04794, mRNA sequence NA coding protein psRNATarget
NM_001176546.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *|||*||||||||=|||||||
targets:592   CUCCACUUCAAUCUCCUCCAA   612

2.5 Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA NA coding protein psRNATarget
BT068645.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *|||*||||||||=|||||||
targets:592   CUCCACUUCAAUCUCCUCCAA   612

2.5 Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds NA coding protein psRNATarget
JB163954.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*|*||||||||||||||
targets:31   AUCCCCCUCAAUCCCCUCCAA   51

2.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*|*||||||||||||||
targets:31   AUCCCCCUCAAUCCCCUCCAA   51

2.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
HI403493.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*|*||||||||||||||
targets:31   AUCCCCCUCAAUCCCCUCCAA   51

2.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
XM_020547108.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||*|||||||||=|||||||
targets:1378   CUCAUCUUCAAUCUCCUCCAA   1398

2.5 PREDICTED: Zea mays replication factor A protein 1-like (LOC103633216), mRNA NA coding protein psRNATarget
XM_008647057.2
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||*|||||||||=|||||||
targets:1604   CUCAUCUUCAAUCUCCUCCAA   1624

2.5 PREDICTED: Zea mays replication factor A protein 1 (LOC103626664), mRNA NA coding protein psRNATarget
XM_020543383.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *|||*||||||||||||=|||
targets:231   UUCCCCUUCAAUCCCCUUCAA   251

2.5 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*|||||||||*||||||
targets:3910   AUCCCCUUCAAUCCACUCCAA   3930

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:438   AUCCAUAUCAAUCCCCUCCAA   458

3.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:692   AUCCGUAUCAAUCCCCUCCAA   712

3.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT062922.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:891   AUCCAUAUCAAUCCCCUCCAA   911

3.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:839   AUCCAUAUCAAUCCCCUCCAA   859

3.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959258.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:837   AUCCAUAUCAAUCCCCUCCAA   857

3.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:838   AUCCAUAUCAAUCCCCUCCAA   858

3.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008666525.2
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:910   AUCCAUAUCAAUCCCCUCCAA   930

3.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:15   AUCCGUAUCAAUCCCCUCCAA   35

3.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:1973   AUCCGUAUCAAUCCCCUCCAA   1993

3.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:1973   AUCCGUAUCAAUCCCCUCCAA   1993

3.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  ||||*=*||||||||||||||
targets:294   AUCCGUAUCAAUCCCCUCCAA   314

3.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EZ051320.1
ncRNA:21   UAGGAGAAGUUAGGGGAGGUU   1
  *||=|||*||||||||||||*
targets:113   UUCUUCUCCAAUCCCCUCCAU   133

3.0 TSA: Zea mays contig52440, mRNA sequence NA coding protein psRNATarget
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