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BaseInfo

ncRNA ID	novel_zma_miR1833
Species	Zea mays
Class	miRNA
Genome position	Chr6:72871831-72871991 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287031;SRR2287164
Length	24
Mature sequence(if miRNA)	138 - CCUUAUAUACUAGGACGGAGGGAG - 161
Stem-loop(if miRNA)	--      A   G         U         G  -CUG    AAAAACUAAAAAAA     CUAUAUUACUGCAUCAAUGUACGC   CCCUCC UCC AGUAUAUAA GCAUAACCA CU    GUUC              UGUAU                        A   |||||| ||| ||||||||| ||||||||| ||    ||||              |||||                        U   GGGAGG AGG UCAUAUAUU CGUAUUGGU GA    UAAG              GAGUA                        G GA      C   A         C         -  AAAA    ----------AUCA     UUAUAUUCCACACUAGAGAGAUCU
Stem-loop sequence	CCCUCCAUCCGAGUAUAUAAUGCAUAACCAGCUCUGGUUCAAAAACUAAAAAAAUGUAUCUAUAUUACUGCAUCAAUGUACGCAUGUCUAGAGAGAUCACACCUUAUAUUAUGAGACUAGAAUAAAAAGUGGUUAUGCCUUAUAUACUAGGACGGAGGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941116.1	ncRNA:24   GAGGGAGGCAGGAUCAUAUAUUCC   1   |||||||||||||||*|||||||| targets:559   CUCCCUCCGUCCUAGGAUAUAAGG   582 Target Full Sequence	1.5	Zea mays clone 1291101 mRNA sequence	NA	coding protein	psRNATarget
EU974289.1	ncRNA:24   GAGGGAGGCAGGAUCAUAUAUUCC   1   ||||||||||||*||||||||||| targets:195   CUCCCUCCGUCCCAGUAUAUAAGG   218 Target Full Sequence	1.5	Zea mays clone 445101 mRNA sequence	NA	coding protein	psRNATarget
XM_020546407.1	ncRNA:24   GAGGGAGGCAGGAUCAUAUAUUCC   1   ||||||=|||||*||||||||||| targets:780   CUCCCUUCGUCCCAGUAUAUAAGG   803 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA	NA	coding protein	psRNATarget
AY106001.1	ncRNA:24   GAGGGAGGCAGGAUCAUAUAUUCC   1   *|||||||||=|||||||||||*| targets:894   AUCCCUCCGUUCUAGUAUAUAAAG   917 Target Full Sequence	2.5	Zea mays PCO085514 mRNA sequence	NA	coding protein	psRNATarget