Search result

BaseInfo

ncRNA ID	novel_zma_miR1832
Species	Zea mays
Class	miRNA
Genome position	Chr6:62655868-62655960 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287031;SRR2287161;SRR2287163;SRR2287164;SRR2287165;SRR2089698;SRR2089704
Length	24
Mature sequence(if miRNA)	70 - AGGCAAAGUGUGACAAGUUAGGCA - 93
Stem-loop(if miRNA)	--G      GC C             -------------       GCG   GA    CUAACU  G CACACUUUGCCUA             AGGUUAG   UUU  A    ||||||  | |||||||||||||             |||||||   |||  U    GAUUGA  C GUGUGAAACGGAU             UCCAAUC   AGA  U ACG      -A A             UGAAAAGACGGAU       --A   AG
Stem-loop sequence	GCUAACUGCGCCACACUUUGCCUAAGGUUAGGCGUUUGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGACAAGUUAGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235416.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:931   UGCCUAACUUGCCACACUUUGCCU   954 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |*|||||||||||||||||||||| targets:933   UACCUAACUUGUCACACUUUGCCU   956 Target Full Sequence	0.0	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |*|||||||||||||||||||||| targets:933   UACCUAACUUGUCACACUUUGCCU   956 Target Full Sequence	0.0	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:1419   UGCCUAACUUGCCACACUUUGCCU   1442 Target Full Sequence	1.5	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:1429   UGCCUAACUUGCCACACUUUGCCU   1452 Target Full Sequence	1.5	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:1049   UGCCUAACUUGCCACACUUUGCCU   1072 Target Full Sequence	1.5	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||=|||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||=|||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||=|||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
EZ060318.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |*||||||||||||=||||||||| targets:155   UACCUAACUUGUCAUACUUUGCCU   178 Target Full Sequence	1.5	TSA: Zea mays contig61440, mRNA sequence	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |*||||||||||||=||||||||| targets:335   UACCUAACUUGUCAUACUUUGCCU   358 Target Full Sequence	1.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||=||||||||*|||||||||||| targets:1484   UGUCUAACUUGCCACACUUUGCCU   1507 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   |||||||*|||*|||||||||||| targets:399   UGCCUAAGUUGCCACACUUUGCCU   422 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:2675   UGGCUAACUUGCCACACUUUGCCU   2698 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   *||||*|||||*|||||||||||| targets:980   AGCCUCACUUGCCACACUUUGCCU   1003 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   ACGGAUUGAACAGUGUGAAACGGA   1   *|||||||||**|||||||||||| targets:2403   AGCCUAACUUACCACACUUUGCCU   2426 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_020542662.1	ncRNA:24   ACGGAUUGA-ACAGUGUGAAACGGA   1   ||*=|||*|-||||||||||||||| targets:1045   UGGUUAAAUGUGUCACACUUUGCCU   1069 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100283356 (LOC100283356), mRNA	NA	coding protein	psRNATarget