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BaseInfo

ncRNA ID novel_zma_miR1831
Species Zea mays
Class miRNA
Genome position Chr6:18387030-18387090 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 1 - GAAGGGGAUUGAUACGGAUUGAGA - 24
Stem-loop(if miRNA) UGAG       -      A          A
    GGUUUGU UCGGUU UUUUCAAUCC U
    ||||||| |||||| ||||||||||
    UUAGGCA AGUUAG GGAAGUUAGG A
AGAG       U      G          U
Stem-loop sequence UGAGGGUUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGAAGGGGAUUGAUACGGAUUGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539810.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  |=||||||||||||||||||||*|
targets:687   UUUCAAUCCGUAUCAAUCCCCUCC   710

1.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:1410   UC-CAAUCCGUAUCAAUCCCCUUC   1432

0.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:1454   UC-CAAUCCGUAUCAAUCCCCUUC   1476

0.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:1472   UC-CAAUCCGUAUCAAUCCCCUUC   1494

0.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:1486   UC-CAAUCCGUAUCAAUCCCCUUC   1508

0.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:1486   UC-CAAUCCGUAUCAAUCCCCUUC   1508

0.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||*|||||||||||=|||||||||
targets:1686   UCACAAUCCGUAUCGAUCCCCUUC   1709

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||||
targets:965   UC-CAAUCCGUAUCAAUCCCCUUC   987

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||=|||||
targets:3109   UC-CAAUCCGUAUCAAUCUCCUUC   3131

1.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   AGAG-UUAGGCAUAGUUAGGGGAAG   1
  ||||-||||||||||||||||||*|
targets:1617   UCUCUAAUCCGUAUCAAUCCCCUCC   1641

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   AGAG--UUAGGCAUAGUUAGGGGAAG   1
  ||||--||||||||||||||||||*|
targets:8   UCUCCCAAUCCGUAUCAAUCCCCUCC   33

1.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  |||||||||*||||||||||||*|
targets:433   UCUCAAUCCAUAUCAAUCCCCUCC   456

2.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||*|||||||||||||||||||*|
targets:1968   UCCCAAUCCGUAUCAAUCCCCUCC   1991

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||*|||||||||||||||||||*|
targets:1968   UCCCAAUCCGUAUCAAUCCCCUCC   1991

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||*|
targets:1036   UC-CAAUCCGUAUCAAUCCCCUCC   1058

1.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||*|
targets:1074   UC-CAAUCCGUAUCAAUCCCCUCC   1096

1.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||*|
targets:290   UC-CAAUCCGUAUCAAUCCCCUCC   312

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-|||||||||||||||||||*=
targets:773   UC-CAAUCCGUAUCAAUCCCCUCU   795

2.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-||||||*||||||||||||*|
targets:887   UC-CAAUCCAUAUCAAUCCCCUCC   909

2.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-||||||*||||||||||||*|
targets:835   UC-CAAUCCAUAUCAAUCCCCUCC   857

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959258.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-||||||*||||||||||||*|
targets:833   UC-CAAUCCAUAUCAAUCCCCUCC   855

2.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-||||||*||||||||||||*|
targets:834   UC-CAAUCCAUAUCAAUCCCCUCC   856

2.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AGAGUUAGGCAUAGUUAGGGGAAG   1
  ||-||||||*||||||||||||*|
targets:906   UC-CAAUCCAUAUCAAUCCCCUCC   928

2.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
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