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BaseInfo

ncRNA ID	novel_zma_miR1830
Species	Zea mays
Class	miRNA
Genome position	Chr6:49939909-49940089 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089714
Length	21
Mature sequence(if miRNA)	1 - CGGGAAGUGGAGGCGUAGAAC - 21
Stem-loop(if miRNA)	--AG           -C     -   G        -  A  UCUUC    --  -         AC A C    A   A   -     GUCG   C U     UAUGCUUCCAU  UUCGG GUC CGACAGUG GG GU     AUGA  CU UGGUCGAUG  G G UGCG GUC CCA CGAGC    AGG G C     |||||||||||  ||||| ||| |||||||| || ||     ||||  || |||||||||  | | |||| ||| ||| |||||    ||| | G     AUGCGGAGGUG  GGGCC CAG GUUGUUAC CC CA     UACU  GA ACCAGUUGC  C C ACGC UAG GGU GCUCG    UCC C G CAAG           AA     G   -        A  -  -CUCA    CC  G         -- - A    G   C   A     ---A   C A
Stem-loop sequence	AGUAUGCUUCCAUCUUCGGGUCGCGACAGUGGGAGUUCUUCAUGACUUGGUCGAUGACGAGCUGCGAGUCACCACGAGCGUCGAGGCGUCGGACCCCUAGCUCGAUGGCGAUGCGCAACCCGUUGACCAGAGCCUCAUACUCACCCACAUUGUUGGACGCCGGGAAGUGGAGGCGUAGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940929.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   ||*|||||||||||=|||||| targets:1956   GUGCUACGCCUCCAUUUCCCG   1976 Target Full Sequence	2.5	Zea mays clone 1215420 mRNA sequence	NA	coding protein	psRNATarget
EU952296.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   *||||||||||||||*||||* targets:29   UUUCUACGCCUCCACCUCCCU   49 Target Full Sequence	2.5	Zea mays clone 1276536 NADH-ubiquinone oxidoreductase 23 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
EU964090.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   *||||||||||||||*||||* targets:44   UUUCUACGCCUCCACCUCCCU   64 Target Full Sequence	2.5	Zea mays clone 275793 NADH-ubiquinone oxidoreductase 23 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
EU944448.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   **|||||||||||||*||||* targets:6   UCUCUACGCCUCCACCUCCCU   26 Target Full Sequence	2.5	Zea mays clone 218916 mRNA sequence	NA	coding protein	psRNATarget
XM_008660550.2	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   **||*||||||||=||||||| targets:85   CCUCCACGCCUCCGCUUCCCG   105 Target Full Sequence	2.5	PREDICTED: Zea mays putative lysine-specific demethylase ELF6 (LOC100381553), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660549.2	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   **||*||||||||=||||||| targets:220   CCUCCACGCCUCCGCUUCCCG   240 Target Full Sequence	2.5	PREDICTED: Zea mays putative lysine-specific demethylase ELF6 (LOC100381553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111683.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   **|||||||||||||*||||* targets:16   UCUCUACGCCUCCACCUCCCU   36 Target Full Sequence	2.5	Zea mays CL4677_1 mRNA sequence	NA	coding protein	psRNATarget
EZ085347.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   |*||*|||*|||||||||||| targets:71   GCUCGACGGCUCCACUUCCCG   91 Target Full Sequence	2.5	TSA: Zea mays contig20991, mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:21   CAAGAU-GCGGAGGUGAAGGGC   1   **||*|-||||||||||||||| targets:468   UGUCAAGCGCCUCCACUUCCCG   489 Target Full Sequence	3.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
AY105075.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   |*||*|||*|||||||||||| targets:122   GCUCGACGGCUCCACUUCCCG   142 Target Full Sequence	2.5	Zea mays PCO067253 mRNA sequence	NA	coding protein	psRNATarget
EU963280.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   |*||*|||*|||||||||||| targets:148   GCUCGACGGCUCCACUUCCCG   168 Target Full Sequence	2.5	Zea mays clone 260358 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952466.1	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   |*||*|||*|||||||||||| targets:147   GCUCGACGGCUCCACUUCCCG   167 Target Full Sequence	2.5	Zea mays clone 1281489 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683372.2	ncRNA:21   CAAGAUGCGGAGGUGAAGGGC   1   |*||*|||*|||||||||||| targets:156   GCUCGACGGCUCCACUUCCCG   176 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X5, mRNA	NA	coding protein	psRNATarget