Search result

BaseInfo

ncRNA ID	ath-miRf10026-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - ACUCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	G   A            U        GAUG     ------ AGUGAUGGUCAAGUGAUGGGGAUGAAGACACUCGACCUCGUGGUCGAGUGAUG GU AAG CACUCGACCUCG GGUCGAGU    UGAUC      G                                                     U || ||| |||||||||||| ||||||||    |||||      | CA UUU GUGAGCUGGGGC CCAGCUCA    UCCUA      C                                                     G   G   G            U        ----     GAAGUU UAGAGUUCUCUGGUGAGCUGGGGGUCCAGCUCAUCUCCCGAAGAGCUAAAGUA
Stem-loop sequence	GUGAAGACACUCGACCUCGUGGUCGAGUGAUGUGAUCGAGUGAUGGUCAAGUGAUGGGGAUGAAGACACUCGACCUCGUGGUCGAGUGAUGUGAUGAAAUCGAGAAGCCCUCUACUCGACCUGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGAUCCUACUCGACCUCGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY227642.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   ||||||||||||||||||||||| targets:853   ACCACUCGACCCCGAGGUCGAGU   875 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   |=||||||||||||||||||||| targets:1616   AUCACUCGACCCCGAGGUCGAGU   1638 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   ||||||||||||*|||||||||| targets:762   ACCACUCGACCCAGAGGUCGAGU   784 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   |||||||||||*||||||||||| targets:1525   ACCACUCGACCACGAGGUCGAGU   1547 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   ||||||||||||||*|||||||| targets:488   ACCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   |||||||||||||*||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   |||||||||||*||||||||||| targets:1149   ACCACUCGACCACGAGGUCGAGU   1171 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   ||||||||||||||*|||||||| targets:1208   ACCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   |*|||||||||||||||||||*| targets:1058   AGCACUCGACCCCGAGGUCGACU   1080 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183005.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   =*|||||||||=||||||||||| targets:1863   GGCACUCGACCUCGAGGUCGAGU   1885 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   UGGUGAGCUGGGGCUCCAGCUCA   1   *|=||||||||||*||||||||| targets:186   UCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget