Search result

BaseInfo

ncRNA ID	novel_zma_miR1829
Species	Zea mays
Class	miRNA
Genome position	Chr6:56584664-56584784 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713
Length	22
Mature sequence(if miRNA)	100 - UUUGGAUAAAGUUGUGAGACAC - 121
Stem-loop(if miRNA)	--   G  U   GU     GA A         G            A     CA      CA   UUU GA AAA  UGUGA  C CUAUGUGUA AAACCUAAGAGA CUACA  UGAAAU  U   ||| || |||  |||||  | ||||||||| |||||||||||| |||||  ||||||   AAA UU UUU  AUACU  G GAUACACAU UUUGGAUUCUCU GGUGU  ACUUUG  A UA   G  C   UG     GC C         G            A     -A      AG
Stem-loop sequence	UUUGGAUAAAGUUGUGAGACACUAUGUGUAGAAACCUAAGAGAACUACACAUGAAAUCAUAGAGUUUCAAUGUGGAUCUCUUAGGUUUGUACACAUAGCGCGUCAUAGUUUUCUUGAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403220.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||=|||||| targets:159   GUGUCUCACAACUUUGUCCAAA   180 Target Full Sequence	1.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||=|||||| targets:159   GUGUCUCACAACUUUGUCCAAA   180 Target Full Sequence	1.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||=|||||| targets:159   GUGUCUCACAACUUUGUCCAAA   180 Target Full Sequence	1.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||*|||||| targets:159   GUGUCUCACAACUUUCUCCAAA   180 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||*|||||| targets:159   GUGUCUCACAACUUUCUCCAAA   180 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   |||||||||||||||*|||||| targets:159   GUGUCUCACAACUUUCUCCAAA   180 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
EU962463.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   ***|||||*||||||||||||* targets:598   UCCUCUCAAAACUUUAUCCAAU   619 Target Full Sequence	2.0	Zea mays clone 242951 zinc finger protein-like 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT036140.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   ***|||||*||||||||||||* targets:582   UCCUCUCAAAACUUUAUCCAAU   603 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0098B08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138868.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   ***|||||*||||||||||||* targets:582   UCCUCUCAAAACUUUAUCCAAU   603 Target Full Sequence	2.0	Zea mays putative RING zinc finger domain superfamily protein (LOC100193782), mRNA	NA	coding protein	psRNATarget
XM_008657736.2	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   ***|||||*||||||||||||* targets:604   UCCUCUCAAAACUUUAUCCAAU   625 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100193782), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943472.1	ncRNA:22   CACAGAGUGUUGAAAUAGGUUU   1   ***|||||*||||||||||||* targets:590   UCCUCUCAAAACUUUAUCCAAU   611 Target Full Sequence	2.0	Zea mays clone 1625413 mRNA sequence	NA	coding protein	psRNATarget